Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01790

Experiment: copper (II) chloride 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_01780 and AO356_01785 are separated by 114 nucleotidesAO356_01785 and AO356_01790 are separated by 101 nucleotidesAO356_01790 and AO356_01795 are separated by 469 nucleotides AO356_01780: AO356_01780 - D-alanyl-D-alanine endopeptidase, at 400,039 to 400,977 _01780 AO356_01785: AO356_01785 - hypothetical protein, at 401,092 to 401,286 _01785 AO356_01790: AO356_01790 - hypothetical protein, at 401,388 to 402,065 _01790 AO356_01795: AO356_01795 - hypothetical protein, at 402,535 to 403,284 _01795 Position (kb) 401 402 403Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 400.391 kb on + strand, within AO356_01780at 400.391 kb on + strand, within AO356_01780at 400.392 kb on - strand, within AO356_01780at 400.392 kb on - strand, within AO356_01780at 400.392 kb on - strand, within AO356_01780at 400.392 kb on - strand, within AO356_01780at 400.525 kb on + strand, within AO356_01780at 400.525 kb on + strand, within AO356_01780at 400.526 kb on - strand, within AO356_01780at 400.606 kb on + strand, within AO356_01780at 400.606 kb on + strand, within AO356_01780at 400.630 kb on - strand, within AO356_01780at 400.669 kb on + strand, within AO356_01780at 400.669 kb on + strand, within AO356_01780at 400.670 kb on - strand, within AO356_01780at 400.670 kb on - strand, within AO356_01780at 400.834 kb on + strand, within AO356_01780at 400.834 kb on + strand, within AO356_01780at 400.834 kb on + strand, within AO356_01780at 400.835 kb on - strand, within AO356_01780at 400.918 kb on + strandat 400.918 kb on + strandat 400.919 kb on - strandat 400.919 kb on - strandat 400.919 kb on - strandat 400.976 kb on - strandat 401.089 kb on + strandat 401.089 kb on + strandat 401.094 kb on - strandat 401.094 kb on - strandat 401.120 kb on + strand, within AO356_01785at 401.120 kb on + strand, within AO356_01785at 401.120 kb on + strand, within AO356_01785at 401.121 kb on - strand, within AO356_01785at 401.121 kb on - strand, within AO356_01785at 401.121 kb on - strand, within AO356_01785at 401.265 kb on + strand, within AO356_01785at 401.265 kb on + strand, within AO356_01785at 401.266 kb on - strand, within AO356_01785at 401.266 kb on - strand, within AO356_01785at 401.266 kb on - strand, within AO356_01785at 401.334 kb on - strandat 401.334 kb on - strandat 401.334 kb on - strandat 401.686 kb on + strand, within AO356_01790at 401.686 kb on + strand, within AO356_01790at 401.686 kb on + strand, within AO356_01790at 401.755 kb on + strand, within AO356_01790at 401.771 kb on - strand, within AO356_01790at 401.792 kb on + strand, within AO356_01790at 401.792 kb on + strand, within AO356_01790at 401.792 kb on + strand, within AO356_01790at 401.792 kb on + strand, within AO356_01790at 401.792 kb on + strand, within AO356_01790at 401.792 kb on + strand, within AO356_01790at 401.793 kb on - strand, within AO356_01790at 401.793 kb on - strand, within AO356_01790at 401.793 kb on - strand, within AO356_01790at 401.793 kb on - strand, within AO356_01790at 401.880 kb on + strand, within AO356_01790at 401.911 kb on + strand, within AO356_01790at 401.912 kb on - strand, within AO356_01790at 401.912 kb on - strand, within AO356_01790at 401.926 kb on + strand, within AO356_01790at 401.927 kb on - strand, within AO356_01790at 401.927 kb on - strand, within AO356_01790at 401.939 kb on + strand, within AO356_01790at 401.939 kb on + strand, within AO356_01790at 401.940 kb on - strand, within AO356_01790at 401.983 kb on - strand, within AO356_01790at 402.030 kb on + strandat 402.121 kb on + strandat 402.122 kb on - strandat 402.122 kb on - strandat 402.122 kb on - strandat 402.122 kb on - strandat 402.122 kb on - strandat 402.143 kb on - strandat 402.144 kb on + strandat 402.144 kb on + strandat 402.144 kb on + strandat 402.145 kb on - strandat 402.150 kb on + strandat 402.150 kb on + strandat 402.150 kb on + strandat 402.150 kb on + strandat 402.151 kb on - strandat 402.151 kb on - strandat 402.151 kb on - strandat 402.151 kb on - strandat 402.151 kb on - strandat 402.151 kb on - strandat 402.151 kb on - strandat 402.162 kb on + strandat 402.173 kb on + strandat 402.174 kb on - strandat 402.174 kb on - strandat 402.233 kb on + strandat 402.233 kb on + strandat 402.234 kb on - strandat 402.247 kb on + strandat 402.247 kb on + strandat 402.248 kb on - strandat 402.248 kb on - strandat 402.276 kb on - strandat 402.276 kb on - strandat 402.321 kb on + strandat 402.322 kb on - strandat 402.322 kb on - strandat 402.623 kb on + strand, within AO356_01795at 402.623 kb on + strand, within AO356_01795at 402.623 kb on + strand, within AO356_01795at 402.623 kb on + strand, within AO356_01795at 402.623 kb on + strand, within AO356_01795at 402.624 kb on - strand, within AO356_01795at 402.624 kb on - strand, within AO356_01795at 402.624 kb on - strand, within AO356_01795at 402.627 kb on + strand, within AO356_01795at 402.627 kb on + strand, within AO356_01795at 402.627 kb on + strand, within AO356_01795at 402.627 kb on + strand, within AO356_01795at 402.627 kb on + strand, within AO356_01795at 402.628 kb on - strand, within AO356_01795at 402.628 kb on - strand, within AO356_01795at 402.628 kb on - strand, within AO356_01795at 402.628 kb on - strand, within AO356_01795at 402.628 kb on - strand, within AO356_01795at 402.628 kb on - strand, within AO356_01795at 402.628 kb on - strand, within AO356_01795at 402.629 kb on + strand, within AO356_01795at 402.629 kb on + strand, within AO356_01795at 402.629 kb on + strand, within AO356_01795at 402.629 kb on + strand, within AO356_01795at 402.629 kb on + strand, within AO356_01795at 402.629 kb on + strand, within AO356_01795at 402.629 kb on + strand, within AO356_01795at 402.630 kb on - strand, within AO356_01795at 402.630 kb on - strand, within AO356_01795at 402.630 kb on - strand, within AO356_01795at 402.630 kb on - strand, within AO356_01795at 402.630 kb on - strand, within AO356_01795at 402.630 kb on - strand, within AO356_01795at 402.640 kb on + strand, within AO356_01795at 402.641 kb on - strand, within AO356_01795

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
remove
400,391 + AO356_01780 0.37 -0.6
400,391 + AO356_01780 0.37 +0.4
400,392 - AO356_01780 0.38 -0.3
400,392 - AO356_01780 0.38 +0.1
400,392 - AO356_01780 0.38 -1.0
400,392 - AO356_01780 0.38 -0.4
400,525 + AO356_01780 0.52 -4.3
400,525 + AO356_01780 0.52 +0.3
400,526 - AO356_01780 0.52 -1.2
400,606 + AO356_01780 0.60 -0.5
400,606 + AO356_01780 0.60 -0.3
400,630 - AO356_01780 0.63 +1.7
400,669 + AO356_01780 0.67 -0.0
400,669 + AO356_01780 0.67 +0.7
400,670 - AO356_01780 0.67 +0.7
400,670 - AO356_01780 0.67 -2.7
400,834 + AO356_01780 0.85 +0.2
400,834 + AO356_01780 0.85 +1.2
400,834 + AO356_01780 0.85 -1.9
400,835 - AO356_01780 0.85 -0.2
400,918 + -0.3
400,918 + +0.3
400,919 - -1.2
400,919 - -1.7
400,919 - -3.2
400,976 - -0.9
401,089 + -1.6
401,089 + +1.8
401,094 - -3.6
401,094 - +1.2
401,120 + AO356_01785 0.14 +0.4
401,120 + AO356_01785 0.14 +1.5
401,120 + AO356_01785 0.14 +0.3
401,121 - AO356_01785 0.15 +0.9
401,121 - AO356_01785 0.15 +0.3
401,121 - AO356_01785 0.15 -1.1
401,265 + AO356_01785 0.89 -0.7
401,265 + AO356_01785 0.89 -0.7
401,266 - AO356_01785 0.89 -3.3
401,266 - AO356_01785 0.89 -0.1
401,266 - AO356_01785 0.89 +2.3
401,334 - -2.1
401,334 - +1.7
401,334 - +1.4
401,686 + AO356_01790 0.44 -2.6
401,686 + AO356_01790 0.44 -1.3
401,686 + AO356_01790 0.44 +0.3
401,755 + AO356_01790 0.54 -2.3
401,771 - AO356_01790 0.56 -0.0
401,792 + AO356_01790 0.60 -0.5
401,792 + AO356_01790 0.60 -0.8
401,792 + AO356_01790 0.60 +0.9
401,792 + AO356_01790 0.60 -0.1
401,792 + AO356_01790 0.60 +0.5
401,792 + AO356_01790 0.60 +0.3
401,793 - AO356_01790 0.60 +1.3
401,793 - AO356_01790 0.60 +0.4
401,793 - AO356_01790 0.60 +1.8
401,793 - AO356_01790 0.60 -0.4
401,880 + AO356_01790 0.73 +0.7
401,911 + AO356_01790 0.77 -1.9
401,912 - AO356_01790 0.77 -1.9
401,912 - AO356_01790 0.77 -1.7
401,926 + AO356_01790 0.79 +1.8
401,927 - AO356_01790 0.79 -0.2
401,927 - AO356_01790 0.79 -0.4
401,939 + AO356_01790 0.81 +0.3
401,939 + AO356_01790 0.81 +1.9
401,940 - AO356_01790 0.81 +0.3
401,983 - AO356_01790 0.88 +0.7
402,030 + -1.3
402,121 + -0.2
402,122 - -0.4
402,122 - +0.1
402,122 - -0.7
402,122 - +0.0
402,122 - +0.5
402,143 - +0.7
402,144 + +0.8
402,144 + -2.1
402,144 + -1.2
402,145 - +0.5
402,150 + +0.3
402,150 + -3.4
402,150 + -2.1
402,150 + -2.5
402,151 - +1.8
402,151 - -2.1
402,151 - +0.1
402,151 - +1.6
402,151 - +1.5
402,151 - +2.4
402,151 - +0.3
402,162 + -2.3
402,173 + -1.7
402,174 - +0.7
402,174 - -1.0
402,233 + -2.1
402,233 + +0.3
402,234 - -0.7
402,247 + -2.3
402,247 + -0.5
402,248 - -0.6
402,248 - +1.3
402,276 - -1.5
402,276 - -1.2
402,321 + +0.4
402,322 - +0.7
402,322 - +0.0
402,623 + AO356_01795 0.12 -1.3
402,623 + AO356_01795 0.12 -2.6
402,623 + AO356_01795 0.12 -0.3
402,623 + AO356_01795 0.12 -0.0
402,623 + AO356_01795 0.12 +0.3
402,624 - AO356_01795 0.12 +3.0
402,624 - AO356_01795 0.12 +0.6
402,624 - AO356_01795 0.12 -0.7
402,627 + AO356_01795 0.12 -0.1
402,627 + AO356_01795 0.12 +0.5
402,627 + AO356_01795 0.12 +0.8
402,627 + AO356_01795 0.12 -1.7
402,627 + AO356_01795 0.12 -3.1
402,628 - AO356_01795 0.12 -0.3
402,628 - AO356_01795 0.12 +0.7
402,628 - AO356_01795 0.12 +0.3
402,628 - AO356_01795 0.12 -3.3
402,628 - AO356_01795 0.12 +0.4
402,628 - AO356_01795 0.12 +2.1
402,628 - AO356_01795 0.12 -0.3
402,629 + AO356_01795 0.13 -0.6
402,629 + AO356_01795 0.13 +1.3
402,629 + AO356_01795 0.13 -0.6
402,629 + AO356_01795 0.13 +0.8
402,629 + AO356_01795 0.13 +1.6
402,629 + AO356_01795 0.13 +0.4
402,629 + AO356_01795 0.13 -0.3
402,630 - AO356_01795 0.13 -0.7
402,630 - AO356_01795 0.13 -1.6
402,630 - AO356_01795 0.13 +0.8
402,630 - AO356_01795 0.13 -3.2
402,630 - AO356_01795 0.13 +1.4
402,630 - AO356_01795 0.13 +0.7
402,640 + AO356_01795 0.14 -0.0
402,641 - AO356_01795 0.14 -1.1

Or see this region's nucleotide sequence