Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00940

Experiment: copper (II) chloride 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_00925 and AO356_00930 are separated by 156 nucleotidesAO356_00930 and AO356_00935 are separated by 129 nucleotidesAO356_00935 and AO356_00940 are separated by 47 nucleotidesAO356_00940 and AO356_00945 are separated by 30 nucleotidesAO356_00945 and AO356_00950 overlap by 4 nucleotides AO356_00925: AO356_00925 - hypothetical protein, at 213,578 to 213,892 _00925 AO356_00930: AO356_00930 - hypothetical protein, at 214,049 to 214,354 _00930 AO356_00935: AO356_00935 - hypothetical protein, at 214,484 to 214,681 _00935 AO356_00940: AO356_00940 - uridine/adenosine nucleosidase (EC 3.2.2.3; EC 3.2.2.7) (from data), at 214,729 to 215,757 _00940 AO356_00945: AO356_00945 - ribose pyranase, at 215,788 to 216,192 _00945 AO356_00950: AO356_00950 - Ribokinase (EC 2.7.1.15) (from data), at 216,189 to 217,103 _00950 Position (kb) 214 215 216Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 213.865 kb on + strandat 213.866 kb on - strandat 213.915 kb on + strandat 213.916 kb on - strandat 214.038 kb on - strandat 214.053 kb on + strandat 214.053 kb on + strandat 214.054 kb on - strandat 214.054 kb on - strandat 214.065 kb on + strandat 214.066 kb on - strandat 214.108 kb on - strand, within AO356_00930at 214.108 kb on - strand, within AO356_00930at 214.108 kb on - strand, within AO356_00930at 214.108 kb on - strand, within AO356_00930at 214.108 kb on - strand, within AO356_00930at 214.108 kb on - strand, within AO356_00930at 214.156 kb on - strand, within AO356_00930at 214.236 kb on + strand, within AO356_00930at 214.236 kb on + strand, within AO356_00930at 214.236 kb on + strand, within AO356_00930at 214.237 kb on - strand, within AO356_00930at 214.237 kb on - strand, within AO356_00930at 214.271 kb on - strand, within AO356_00930at 214.346 kb on + strandat 214.347 kb on - strandat 214.347 kb on - strandat 214.412 kb on + strandat 214.413 kb on - strandat 214.413 kb on - strandat 214.413 kb on - strandat 214.446 kb on + strandat 214.446 kb on + strandat 214.456 kb on + strandat 214.456 kb on + strandat 214.457 kb on - strandat 214.457 kb on - strandat 214.499 kb on - strandat 214.544 kb on + strand, within AO356_00935at 214.544 kb on + strand, within AO356_00935at 214.544 kb on + strand, within AO356_00935at 214.545 kb on - strand, within AO356_00935at 214.585 kb on - strand, within AO356_00935at 214.585 kb on - strand, within AO356_00935at 214.612 kb on - strand, within AO356_00935at 214.715 kb on - strandat 214.715 kb on - strandat 214.717 kb on - strandat 214.731 kb on - strandat 214.829 kb on + strandat 214.830 kb on - strandat 214.830 kb on - strandat 214.925 kb on + strand, within AO356_00940at 214.926 kb on - strand, within AO356_00940at 214.926 kb on - strand, within AO356_00940at 214.926 kb on - strand, within AO356_00940at 214.970 kb on + strand, within AO356_00940at 214.994 kb on + strand, within AO356_00940at 214.994 kb on + strand, within AO356_00940at 214.995 kb on - strand, within AO356_00940at 214.995 kb on - strand, within AO356_00940at 214.995 kb on - strand, within AO356_00940at 215.105 kb on + strand, within AO356_00940at 215.105 kb on + strand, within AO356_00940at 215.106 kb on - strand, within AO356_00940at 215.187 kb on + strand, within AO356_00940at 215.187 kb on + strand, within AO356_00940at 215.187 kb on + strand, within AO356_00940at 215.188 kb on - strand, within AO356_00940at 215.348 kb on + strand, within AO356_00940at 215.349 kb on - strand, within AO356_00940at 215.349 kb on - strand, within AO356_00940at 215.438 kb on + strand, within AO356_00940at 215.439 kb on - strand, within AO356_00940at 215.779 kb on - strandat 215.789 kb on + strandat 215.789 kb on + strandat 215.790 kb on - strandat 215.818 kb on - strandat 215.941 kb on + strand, within AO356_00945at 216.207 kb on + strandat 216.207 kb on + strandat 216.208 kb on - strandat 216.208 kb on - strandat 216.345 kb on - strand, within AO356_00950at 216.562 kb on + strand, within AO356_00950at 216.562 kb on + strand, within AO356_00950at 216.563 kb on - strand, within AO356_00950at 216.563 kb on - strand, within AO356_00950at 216.577 kb on + strand, within AO356_00950at 216.578 kb on - strand, within AO356_00950

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 2.5 mM
remove
213,865 + +0.2
213,866 - -1.4
213,915 + -0.5
213,916 - +0.4
214,038 - -1.8
214,053 + +0.2
214,053 + -1.8
214,054 - -0.2
214,054 - -0.6
214,065 + +1.1
214,066 - -0.0
214,108 - AO356_00930 0.19 -0.8
214,108 - AO356_00930 0.19 -0.8
214,108 - AO356_00930 0.19 -1.4
214,108 - AO356_00930 0.19 -0.6
214,108 - AO356_00930 0.19 -1.4
214,108 - AO356_00930 0.19 +0.7
214,156 - AO356_00930 0.35 +1.5
214,236 + AO356_00930 0.61 +0.6
214,236 + AO356_00930 0.61 -0.4
214,236 + AO356_00930 0.61 -1.6
214,237 - AO356_00930 0.61 +0.7
214,237 - AO356_00930 0.61 +1.2
214,271 - AO356_00930 0.73 -1.9
214,346 + -0.2
214,347 - +1.6
214,347 - -1.0
214,412 + -0.2
214,413 - -0.1
214,413 - +1.3
214,413 - -2.8
214,446 + -1.9
214,446 + +0.5
214,456 + +0.9
214,456 + +1.4
214,457 - +1.0
214,457 - +0.3
214,499 - -1.8
214,544 + AO356_00935 0.30 +1.7
214,544 + AO356_00935 0.30 +1.2
214,544 + AO356_00935 0.30 -0.9
214,545 - AO356_00935 0.31 +0.6
214,585 - AO356_00935 0.51 -0.8
214,585 - AO356_00935 0.51 +1.3
214,612 - AO356_00935 0.65 +0.4
214,715 - +0.2
214,715 - -1.0
214,717 - -0.3
214,731 - -2.4
214,829 + -0.3
214,830 - -2.4
214,830 - +0.3
214,925 + AO356_00940 0.19 +0.5
214,926 - AO356_00940 0.19 -0.1
214,926 - AO356_00940 0.19 -0.1
214,926 - AO356_00940 0.19 -1.6
214,970 + AO356_00940 0.23 -0.4
214,994 + AO356_00940 0.26 +0.4
214,994 + AO356_00940 0.26 -0.1
214,995 - AO356_00940 0.26 -0.4
214,995 - AO356_00940 0.26 +0.4
214,995 - AO356_00940 0.26 -0.2
215,105 + AO356_00940 0.37 -0.8
215,105 + AO356_00940 0.37 -0.8
215,106 - AO356_00940 0.37 -0.4
215,187 + AO356_00940 0.45 -2.1
215,187 + AO356_00940 0.45 +2.2
215,187 + AO356_00940 0.45 -1.5
215,188 - AO356_00940 0.45 +2.0
215,348 + AO356_00940 0.60 -0.3
215,349 - AO356_00940 0.60 -1.7
215,349 - AO356_00940 0.60 +0.9
215,438 + AO356_00940 0.69 +2.2
215,439 - AO356_00940 0.69 -3.4
215,779 - +0.7
215,789 + +1.3
215,789 + +0.2
215,790 - +0.5
215,818 - +1.2
215,941 + AO356_00945 0.38 -1.0
216,207 + -1.4
216,207 + +2.1
216,208 - +0.6
216,208 - +2.3
216,345 - AO356_00950 0.17 +0.7
216,562 + AO356_00950 0.41 -0.3
216,562 + AO356_00950 0.41 +1.4
216,563 - AO356_00950 0.41 -0.1
216,563 - AO356_00950 0.41 +0.6
216,577 + AO356_00950 0.42 -3.4
216,578 - AO356_00950 0.43 -1.1

Or see this region's nucleotide sequence