Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_002962

Experiment: L-Phenylalanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_002961 and ABIE53_002962 are separated by 146 nucleotidesABIE53_002962 and ABIE53_002963 are separated by 235 nucleotides ABIE53_002961: ABIE53_002961 - MFS family permease, at 3,349,809 to 3,351,152 _002961 ABIE53_002962: ABIE53_002962 - DNA-binding transcriptional LysR family regulator, at 3,351,299 to 3,352,273 _002962 ABIE53_002963: ABIE53_002963 - alanyl-tRNA synthetase, at 3,352,509 to 3,355,181 _002963 Position (kb) 3351 3352 3353Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3350.335 kb on + strand, within ABIE53_002961at 3350.336 kb on - strand, within ABIE53_002961at 3350.336 kb on - strand, within ABIE53_002961at 3350.336 kb on - strand, within ABIE53_002961at 3350.336 kb on - strand, within ABIE53_002961at 3350.356 kb on + strand, within ABIE53_002961at 3350.356 kb on + strand, within ABIE53_002961at 3350.356 kb on + strand, within ABIE53_002961at 3350.357 kb on - strand, within ABIE53_002961at 3350.357 kb on - strand, within ABIE53_002961at 3350.690 kb on + strand, within ABIE53_002961at 3350.692 kb on + strand, within ABIE53_002961at 3350.692 kb on + strand, within ABIE53_002961at 3350.692 kb on + strand, within ABIE53_002961at 3350.693 kb on - strand, within ABIE53_002961at 3350.932 kb on + strand, within ABIE53_002961at 3350.932 kb on + strand, within ABIE53_002961at 3350.932 kb on + strand, within ABIE53_002961at 3350.932 kb on + strand, within ABIE53_002961at 3350.933 kb on - strand, within ABIE53_002961at 3350.941 kb on + strand, within ABIE53_002961at 3350.942 kb on - strand, within ABIE53_002961at 3350.942 kb on - strand, within ABIE53_002961at 3351.224 kb on + strandat 3351.224 kb on + strandat 3351.225 kb on - strandat 3351.232 kb on + strandat 3351.232 kb on + strandat 3351.233 kb on - strandat 3351.233 kb on - strandat 3351.233 kb on - strandat 3351.233 kb on - strandat 3351.233 kb on - strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.235 kb on + strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.236 kb on - strandat 3351.498 kb on - strand, within ABIE53_002962at 3351.629 kb on + strand, within ABIE53_002962at 3351.629 kb on + strand, within ABIE53_002962at 3351.629 kb on + strand, within ABIE53_002962at 3351.629 kb on + strand, within ABIE53_002962at 3351.629 kb on + strand, within ABIE53_002962at 3351.630 kb on - strand, within ABIE53_002962at 3351.630 kb on - strand, within ABIE53_002962at 3351.630 kb on - strand, within ABIE53_002962at 3351.630 kb on - strand, within ABIE53_002962at 3351.630 kb on - strand, within ABIE53_002962at 3351.630 kb on - strand, within ABIE53_002962at 3351.734 kb on - strand, within ABIE53_002962at 3351.734 kb on - strand, within ABIE53_002962at 3351.734 kb on - strand, within ABIE53_002962at 3351.734 kb on - strand, within ABIE53_002962at 3351.765 kb on + strand, within ABIE53_002962at 3351.765 kb on + strand, within ABIE53_002962at 3351.765 kb on + strand, within ABIE53_002962at 3351.766 kb on - strand, within ABIE53_002962at 3351.766 kb on - strand, within ABIE53_002962at 3351.766 kb on - strand, within ABIE53_002962at 3351.766 kb on - strand, within ABIE53_002962at 3351.766 kb on - strand, within ABIE53_002962at 3351.766 kb on - strand, within ABIE53_002962at 3351.899 kb on + strand, within ABIE53_002962at 3351.899 kb on + strand, within ABIE53_002962at 3351.899 kb on + strand, within ABIE53_002962at 3351.899 kb on + strand, within ABIE53_002962at 3351.899 kb on + strand, within ABIE53_002962at 3351.899 kb on + strand, within ABIE53_002962at 3351.900 kb on - strand, within ABIE53_002962at 3351.914 kb on + strand, within ABIE53_002962at 3351.914 kb on + strand, within ABIE53_002962at 3351.914 kb on + strand, within ABIE53_002962at 3351.914 kb on + strand, within ABIE53_002962at 3351.915 kb on - strand, within ABIE53_002962at 3351.915 kb on - strand, within ABIE53_002962at 3351.915 kb on - strand, within ABIE53_002962at 3351.915 kb on - strand, within ABIE53_002962at 3351.962 kb on + strand, within ABIE53_002962at 3351.962 kb on + strand, within ABIE53_002962at 3351.963 kb on - strand, within ABIE53_002962at 3352.052 kb on - strand, within ABIE53_002962at 3352.052 kb on - strand, within ABIE53_002962at 3352.052 kb on - strand, within ABIE53_002962at 3352.272 kb on - strandat 3352.439 kb on - strandat 3352.439 kb on - strandat 3352.461 kb on + strandat 3352.461 kb on + strandat 3352.461 kb on + strandat 3352.461 kb on + strandat 3352.462 kb on - strandat 3352.473 kb on + strandat 3352.474 kb on - strandat 3352.474 kb on - strandat 3352.474 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (C)
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3,350,335 + ABIE53_002961 0.39 -0.1
3,350,336 - ABIE53_002961 0.39 -1.6
3,350,336 - ABIE53_002961 0.39 +0.0
3,350,336 - ABIE53_002961 0.39 -0.9
3,350,336 - ABIE53_002961 0.39 -0.5
3,350,356 + ABIE53_002961 0.41 -0.8
3,350,356 + ABIE53_002961 0.41 -2.0
3,350,356 + ABIE53_002961 0.41 -1.3
3,350,357 - ABIE53_002961 0.41 +1.2
3,350,357 - ABIE53_002961 0.41 -0.5
3,350,690 + ABIE53_002961 0.66 +0.0
3,350,692 + ABIE53_002961 0.66 +0.2
3,350,692 + ABIE53_002961 0.66 +1.8
3,350,692 + ABIE53_002961 0.66 -1.6
3,350,693 - ABIE53_002961 0.66 +0.5
3,350,932 + ABIE53_002961 0.84 +0.7
3,350,932 + ABIE53_002961 0.84 +0.2
3,350,932 + ABIE53_002961 0.84 -1.0
3,350,932 + ABIE53_002961 0.84 -0.1
3,350,933 - ABIE53_002961 0.84 -1.4
3,350,941 + ABIE53_002961 0.84 -0.0
3,350,942 - ABIE53_002961 0.84 -0.5
3,350,942 - ABIE53_002961 0.84 -1.3
3,351,224 + -0.5
3,351,224 + -1.3
3,351,225 - -1.4
3,351,232 + -2.3
3,351,232 + +1.4
3,351,233 - +1.0
3,351,233 - -2.1
3,351,233 - +1.0
3,351,233 - -0.4
3,351,233 - +1.7
3,351,235 + -0.7
3,351,235 + +3.0
3,351,235 + -0.5
3,351,235 + -0.6
3,351,235 + -0.5
3,351,235 + -0.0
3,351,235 + -1.4
3,351,235 + +0.3
3,351,235 + +0.8
3,351,235 + -0.4
3,351,235 + -0.4
3,351,235 + -1.7
3,351,235 + -0.6
3,351,235 + -0.1
3,351,235 + +0.3
3,351,235 + -0.7
3,351,235 + -0.0
3,351,236 - +1.6
3,351,236 - -1.1
3,351,236 - -1.1
3,351,236 - +0.7
3,351,236 - -1.0
3,351,236 - -0.9
3,351,236 - -2.2
3,351,236 - -1.1
3,351,236 - -0.8
3,351,236 - -0.6
3,351,236 - -2.5
3,351,236 - -0.6
3,351,236 - +0.1
3,351,236 - +0.1
3,351,236 - -0.3
3,351,498 - ABIE53_002962 0.20 +1.0
3,351,629 + ABIE53_002962 0.34 -0.3
3,351,629 + ABIE53_002962 0.34 +0.7
3,351,629 + ABIE53_002962 0.34 +1.7
3,351,629 + ABIE53_002962 0.34 +2.6
3,351,629 + ABIE53_002962 0.34 +0.4
3,351,630 - ABIE53_002962 0.34 -1.7
3,351,630 - ABIE53_002962 0.34 -1.0
3,351,630 - ABIE53_002962 0.34 -2.9
3,351,630 - ABIE53_002962 0.34 -0.6
3,351,630 - ABIE53_002962 0.34 +2.0
3,351,630 - ABIE53_002962 0.34 -1.2
3,351,734 - ABIE53_002962 0.45 +0.2
3,351,734 - ABIE53_002962 0.45 -0.7
3,351,734 - ABIE53_002962 0.45 -0.7
3,351,734 - ABIE53_002962 0.45 +0.7
3,351,765 + ABIE53_002962 0.48 -0.5
3,351,765 + ABIE53_002962 0.48 -2.3
3,351,765 + ABIE53_002962 0.48 +0.3
3,351,766 - ABIE53_002962 0.48 -2.0
3,351,766 - ABIE53_002962 0.48 -1.3
3,351,766 - ABIE53_002962 0.48 +0.1
3,351,766 - ABIE53_002962 0.48 -0.1
3,351,766 - ABIE53_002962 0.48 -1.5
3,351,766 - ABIE53_002962 0.48 +1.4
3,351,899 + ABIE53_002962 0.62 -0.3
3,351,899 + ABIE53_002962 0.62 -0.9
3,351,899 + ABIE53_002962 0.62 -0.3
3,351,899 + ABIE53_002962 0.62 -1.0
3,351,899 + ABIE53_002962 0.62 -2.2
3,351,899 + ABIE53_002962 0.62 -0.4
3,351,900 - ABIE53_002962 0.62 -0.0
3,351,914 + ABIE53_002962 0.63 -0.6
3,351,914 + ABIE53_002962 0.63 -0.4
3,351,914 + ABIE53_002962 0.63 +0.9
3,351,914 + ABIE53_002962 0.63 -0.3
3,351,915 - ABIE53_002962 0.63 -1.9
3,351,915 - ABIE53_002962 0.63 -0.1
3,351,915 - ABIE53_002962 0.63 -0.1
3,351,915 - ABIE53_002962 0.63 -0.3
3,351,962 + ABIE53_002962 0.68 -0.3
3,351,962 + ABIE53_002962 0.68 -0.9
3,351,963 - ABIE53_002962 0.68 -0.7
3,352,052 - ABIE53_002962 0.77 -0.3
3,352,052 - ABIE53_002962 0.77 +0.8
3,352,052 - ABIE53_002962 0.77 +1.4
3,352,272 - +0.3
3,352,439 - -1.1
3,352,439 - -1.6
3,352,461 + -0.7
3,352,461 + -0.9
3,352,461 + -0.3
3,352,461 + +1.5
3,352,462 - +0.4
3,352,473 + -0.7
3,352,474 - +0.7
3,352,474 - -0.6
3,352,474 - +0.5

Or see this region's nucleotide sequence