Strain Fitness in Sinorhizobium meliloti 1021 around SMc04081

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03961 and SMc04081 overlap by 4 nucleotidesSMc04081 and SMc03963 overlap by 4 nucleotides SMc03961: SMc03961 - sulfolipid (UDP-sulfoquinovose) biosynthesis protein, at 2,954,817 to 2,956,037 SMc03961 SMc04081: SMc04081 - glycosyl transferase (sulfolipid biosynthesis) protein, at 2,956,034 to 2,956,909 SMc04081 SMc03963: SMc03963 - sulfolipid biosynthesis protein, at 2,956,906 to 2,957,832 SMc03963 Position (kb) 2956 2957Strain fitness (log2 ratio) -1 0 1at 2955.160 kb on - strand, within SMc03961at 2955.248 kb on + strand, within SMc03961at 2955.249 kb on - strand, within SMc03961at 2955.249 kb on - strand, within SMc03961at 2955.301 kb on - strand, within SMc03961at 2955.381 kb on + strand, within SMc03961at 2955.382 kb on - strand, within SMc03961at 2955.424 kb on - strand, within SMc03961at 2955.544 kb on - strand, within SMc03961at 2955.588 kb on + strand, within SMc03961at 2955.639 kb on - strand, within SMc03961at 2955.639 kb on - strand, within SMc03961at 2956.128 kb on - strand, within SMc04081at 2956.186 kb on + strand, within SMc04081at 2956.186 kb on + strand, within SMc04081at 2956.186 kb on + strand, within SMc04081at 2956.393 kb on - strand, within SMc04081at 2956.393 kb on - strand, within SMc04081at 2956.511 kb on + strand, within SMc04081at 2956.511 kb on + strand, within SMc04081at 2956.512 kb on - strand, within SMc04081at 2956.703 kb on + strand, within SMc04081at 2956.703 kb on + strand, within SMc04081at 2956.704 kb on - strand, within SMc04081at 2956.704 kb on - strand, within SMc04081at 2956.704 kb on - strand, within SMc04081at 2956.704 kb on - strand, within SMc04081at 2956.766 kb on + strand, within SMc04081at 2956.767 kb on - strand, within SMc04081at 2957.097 kb on + strand, within SMc03963at 2957.098 kb on - strand, within SMc03963at 2957.098 kb on - strand, within SMc03963at 2957.101 kb on + strand, within SMc03963at 2957.101 kb on + strand, within SMc03963at 2957.102 kb on - strand, within SMc03963at 2957.102 kb on - strand, within SMc03963at 2957.104 kb on + strand, within SMc03963at 2957.105 kb on - strand, within SMc03963at 2957.332 kb on + strand, within SMc03963at 2957.333 kb on - strand, within SMc03963at 2957.342 kb on + strand, within SMc03963at 2957.422 kb on + strand, within SMc03963at 2957.476 kb on + strand, within SMc03963at 2957.476 kb on + strand, within SMc03963

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,955,160 - SMc03961 0.28 +0.7
2,955,248 + SMc03961 0.35 +1.5
2,955,249 - SMc03961 0.35 +1.3
2,955,249 - SMc03961 0.35 +0.4
2,955,301 - SMc03961 0.40 +0.2
2,955,381 + SMc03961 0.46 +0.8
2,955,382 - SMc03961 0.46 +1.2
2,955,424 - SMc03961 0.50 +1.1
2,955,544 - SMc03961 0.60 +0.8
2,955,588 + SMc03961 0.63 +0.4
2,955,639 - SMc03961 0.67 +1.2
2,955,639 - SMc03961 0.67 +0.6
2,956,128 - SMc04081 0.11 +1.3
2,956,186 + SMc04081 0.17 +0.8
2,956,186 + SMc04081 0.17 +0.4
2,956,186 + SMc04081 0.17 -0.6
2,956,393 - SMc04081 0.41 +0.6
2,956,393 - SMc04081 0.41 +0.5
2,956,511 + SMc04081 0.54 +0.3
2,956,511 + SMc04081 0.54 +0.8
2,956,512 - SMc04081 0.55 +0.3
2,956,703 + SMc04081 0.76 +0.2
2,956,703 + SMc04081 0.76 +0.3
2,956,704 - SMc04081 0.76 +0.2
2,956,704 - SMc04081 0.76 +0.5
2,956,704 - SMc04081 0.76 +1.2
2,956,704 - SMc04081 0.76 +1.0
2,956,766 + SMc04081 0.84 +0.4
2,956,767 - SMc04081 0.84 +0.8
2,957,097 + SMc03963 0.21 +0.6
2,957,098 - SMc03963 0.21 +1.7
2,957,098 - SMc03963 0.21 +1.7
2,957,101 + SMc03963 0.21 +0.0
2,957,101 + SMc03963 0.21 +0.9
2,957,102 - SMc03963 0.21 +0.2
2,957,102 - SMc03963 0.21 +0.4
2,957,104 + SMc03963 0.21 -0.0
2,957,105 - SMc03963 0.21 +0.1
2,957,332 + SMc03963 0.46 +0.1
2,957,333 - SMc03963 0.46 +0.1
2,957,342 + SMc03963 0.47 +1.2
2,957,422 + SMc03963 0.56 +0.5
2,957,476 + SMc03963 0.61 +0.4
2,957,476 + SMc03963 0.61 +0.8

Or see this region's nucleotide sequence