Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03995 and SMc03996 are separated by 9 nucleotides SMc03996 and SMc03997 are separated by 99 nucleotides SMc03997 and SMc03998 are separated by 80 nucleotides SMc03998 and SMc03999 are separated by 153 nucleotides SMc03999 and SMc04000 are separated by 212 nucleotides
SMc03995: SMc03995 - hypothetical protein, at 2,993,348 to 2,994,493
SMc03995
SMc03996: SMc03996 - thiamine-phosphate pyrophosphorylase, at 2,994,503 to 2,995,156
SMc03996
SMc03997: SMc03997 - hypothetical protein, at 2,995,256 to 2,996,038
SMc03997
SMc03998: SMc03998 - transcriptional regulator, at 2,996,119 to 2,996,379
SMc03998
SMc03999: SMc03999 - hypothetical protein, at 2,996,533 to 2,996,706
SMc03999
SMc04000: SMc04000 - hypothetical protein, at 2,996,919 to 2,997,122
SMc04000
Position (kb)
2995
2996
2997 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2994.740 kb on + strand, within SMc03996 at 2994.741 kb on - strand, within SMc03996 at 2994.741 kb on - strand, within SMc03996 at 2994.772 kb on - strand, within SMc03996 at 2994.772 kb on - strand, within SMc03996 at 2994.944 kb on + strand, within SMc03996 at 2994.945 kb on - strand, within SMc03996 at 2995.026 kb on + strand, within SMc03996 at 2995.026 kb on + strand, within SMc03996 at 2995.050 kb on - strand, within SMc03996 at 2995.099 kb on + strand at 2995.223 kb on - strand at 2995.277 kb on + strand at 2995.278 kb on - strand at 2995.278 kb on - strand at 2995.535 kb on + strand, within SMc03997 at 2995.599 kb on - strand, within SMc03997 at 2995.599 kb on - strand, within SMc03997 at 2995.604 kb on + strand, within SMc03997 at 2995.605 kb on - strand, within SMc03997 at 2995.605 kb on - strand, within SMc03997 at 2995.605 kb on - strand, within SMc03997 at 2995.605 kb on - strand, within SMc03997 at 2995.739 kb on + strand, within SMc03997 at 2995.739 kb on + strand, within SMc03997 at 2995.739 kb on + strand, within SMc03997 at 2995.740 kb on - strand, within SMc03997 at 2995.740 kb on - strand, within SMc03997 at 2995.774 kb on + strand, within SMc03997 at 2995.775 kb on - strand, within SMc03997 at 2995.775 kb on - strand, within SMc03997 at 2995.775 kb on - strand, within SMc03997 at 2995.953 kb on - strand, within SMc03997 at 2995.953 kb on - strand, within SMc03997 at 2995.964 kb on + strand at 2995.964 kb on + strand at 2995.964 kb on + strand at 2995.965 kb on - strand at 2996.022 kb on + strand at 2996.023 kb on - strand at 2996.023 kb on - strand at 2996.465 kb on - strand at 2996.644 kb on + strand, within SMc03999 at 2996.645 kb on - strand, within SMc03999 at 2996.724 kb on + strand at 2996.725 kb on - strand at 2996.725 kb on - strand at 2996.725 kb on - strand at 2996.776 kb on - strand at 2996.776 kb on - strand at 2996.800 kb on + strand at 2996.854 kb on + strand at 2996.855 kb on - strand at 2996.855 kb on - strand at 2996.901 kb on + strand at 2996.901 kb on + strand at 2996.902 kb on - strand at 2996.955 kb on - strand, within SMc04000 at 2996.985 kb on + strand, within SMc04000
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,994,740 + SMc03996 0.36 +1.2 2,994,741 - SMc03996 0.36 +1.7 2,994,741 - SMc03996 0.36 +0.7 2,994,772 - SMc03996 0.41 +1.3 2,994,772 - SMc03996 0.41 +1.5 2,994,944 + SMc03996 0.67 +0.5 2,994,945 - SMc03996 0.68 +0.8 2,995,026 + SMc03996 0.80 +0.1 2,995,026 + SMc03996 0.80 -0.4 2,995,050 - SMc03996 0.84 +1.6 2,995,099 + +1.9 2,995,223 - -0.7 2,995,277 + -0.1 2,995,278 - -0.2 2,995,278 - -0.3 2,995,535 + SMc03997 0.36 -1.9 2,995,599 - SMc03997 0.44 -1.4 2,995,599 - SMc03997 0.44 -1.6 2,995,604 + SMc03997 0.44 +0.0 2,995,605 - SMc03997 0.45 +0.2 2,995,605 - SMc03997 0.45 -1.2 2,995,605 - SMc03997 0.45 -0.5 2,995,605 - SMc03997 0.45 -0.4 2,995,739 + SMc03997 0.62 +0.1 2,995,739 + SMc03997 0.62 -0.1 2,995,739 + SMc03997 0.62 +0.0 2,995,740 - SMc03997 0.62 -1.1 2,995,740 - SMc03997 0.62 +1.0 2,995,774 + SMc03997 0.66 -0.5 2,995,775 - SMc03997 0.66 +0.1 2,995,775 - SMc03997 0.66 -0.5 2,995,775 - SMc03997 0.66 -0.2 2,995,953 - SMc03997 0.89 -0.8 2,995,953 - SMc03997 0.89 +1.3 2,995,964 + -1.0 2,995,964 + +0.8 2,995,964 + -0.1 2,995,965 - +0.2 2,996,022 + -0.3 2,996,023 - -0.8 2,996,023 - -2.0 2,996,465 - -0.0 2,996,644 + SMc03999 0.64 -0.3 2,996,645 - SMc03999 0.64 +1.8 2,996,724 + +1.0 2,996,725 - -0.7 2,996,725 - +0.2 2,996,725 - +0.4 2,996,776 - -1.1 2,996,776 - -0.4 2,996,800 + +0.4 2,996,854 + -0.8 2,996,855 - +2.3 2,996,855 - +1.7 2,996,901 + -0.7 2,996,901 + +0.3 2,996,902 - +2.1 2,996,955 - SMc04000 0.18 +3.1 2,996,985 + SMc04000 0.32 +0.5
Or see this region's nucleotide sequence