Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03886 and SMc03887 are separated by 451 nucleotides SMc03887 and SMc03888 are separated by 9 nucleotides
SMc03886: SMc03886 - transposase, at 3,552,832 to 3,553,908
SMc03886
SMc03887: SMc03887 - amino acid efflux protein, at 3,554,360 to 3,555,007
SMc03887
SMc03888: SMc03888 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 3,555,017 to 3,556,270
SMc03888
Position (kb)
3554
3555
3556 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3554.127 kb on + strand at 3554.127 kb on + strand at 3554.127 kb on + strand at 3554.127 kb on + strand at 3554.127 kb on + strand at 3554.127 kb on + strand at 3554.127 kb on + strand at 3554.127 kb on + strand at 3554.127 kb on + strand at 3554.128 kb on - strand at 3554.128 kb on - strand at 3554.128 kb on - strand at 3554.129 kb on + strand at 3554.129 kb on + strand at 3554.129 kb on + strand at 3554.130 kb on - strand at 3554.262 kb on + strand at 3554.325 kb on + strand at 3554.326 kb on - strand at 3554.384 kb on + strand at 3554.417 kb on + strand at 3554.417 kb on + strand at 3554.417 kb on + strand at 3554.418 kb on - strand at 3554.418 kb on - strand at 3554.419 kb on + strand at 3554.531 kb on + strand, within SMc03887 at 3554.531 kb on + strand, within SMc03887 at 3554.624 kb on + strand, within SMc03887 at 3554.624 kb on + strand, within SMc03887 at 3554.624 kb on + strand, within SMc03887 at 3554.642 kb on + strand, within SMc03887 at 3554.642 kb on + strand, within SMc03887 at 3554.642 kb on + strand, within SMc03887 at 3554.642 kb on + strand, within SMc03887 at 3554.645 kb on - strand, within SMc03887 at 3555.016 kb on - strand at 3555.018 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,554,127 + -0.7 3,554,127 + -0.9 3,554,127 + +0.7 3,554,127 + -0.6 3,554,127 + -3.4 3,554,127 + -0.2 3,554,127 + +0.0 3,554,127 + +0.1 3,554,127 + -0.0 3,554,128 - +0.9 3,554,128 - -1.1 3,554,128 - -0.2 3,554,129 + -1.6 3,554,129 + +0.1 3,554,129 + -0.1 3,554,130 - -1.8 3,554,262 + +1.2 3,554,325 + +0.1 3,554,326 - -1.4 3,554,384 + +0.5 3,554,417 + -2.0 3,554,417 + -1.2 3,554,417 + +0.0 3,554,418 - -0.6 3,554,418 - -0.3 3,554,419 + -0.3 3,554,531 + SMc03887 0.26 -0.5 3,554,531 + SMc03887 0.26 +0.5 3,554,624 + SMc03887 0.41 +0.8 3,554,624 + SMc03887 0.41 -0.4 3,554,624 + SMc03887 0.41 -0.4 3,554,642 + SMc03887 0.44 -0.2 3,554,642 + SMc03887 0.44 -0.4 3,554,642 + SMc03887 0.44 +0.3 3,554,642 + SMc03887 0.44 -0.9 3,554,645 - SMc03887 0.44 -1.8 3,555,016 - -0.4 3,555,018 + -0.5
Or see this region's nucleotide sequence