Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03245 and SMc03746 are separated by 61 nucleotides SMc03746 and SMc03747 are separated by 276 nucleotides SMc03747 and SMc03748 are separated by 141 nucleotides
SMc03245: SMc03245 - amidase, at 3,353,951 to 3,355,258
SMc03245
SMc03746: SMc03746 - hypothetical protein, at 3,355,320 to 3,355,481
SMc03746
SMc03747: SMc03747 - hypothetical protein, at 3,355,758 to 3,356,261
SMc03747
SMc03748: SMc03748 - hypothetical protein, at 3,356,403 to 3,357,227
SMc03748
Position (kb)
3355
3356 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3354.504 kb on + strand, within SMc03245 at 3354.889 kb on - strand, within SMc03245 at 3355.070 kb on + strand, within SMc03245 at 3355.100 kb on - strand, within SMc03245 at 3355.137 kb on + strand at 3355.138 kb on - strand at 3355.138 kb on - strand at 3355.138 kb on - strand at 3355.316 kb on + strand at 3355.316 kb on + strand at 3355.426 kb on + strand, within SMc03746 at 3355.426 kb on + strand, within SMc03746 at 3355.427 kb on - strand, within SMc03746 at 3355.510 kb on + strand at 3355.529 kb on + strand at 3355.560 kb on - strand at 3355.560 kb on - strand at 3355.596 kb on + strand at 3355.651 kb on - strand at 3355.716 kb on - strand at 3356.278 kb on + strand at 3356.279 kb on - strand at 3356.304 kb on + strand at 3356.304 kb on + strand at 3356.305 kb on - strand at 3356.318 kb on + strand at 3356.318 kb on + strand at 3356.476 kb on - strand at 3356.480 kb on + strand at 3356.480 kb on + strand at 3356.480 kb on + strand at 3356.480 kb on + strand at 3356.480 kb on + strand at 3356.480 kb on + strand at 3356.481 kb on - strand at 3356.481 kb on - strand at 3356.481 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,354,504 + SMc03245 0.42 -0.4 3,354,889 - SMc03245 0.72 -0.7 3,355,070 + SMc03245 0.86 +1.0 3,355,100 - SMc03245 0.88 -0.8 3,355,137 + -0.1 3,355,138 - +1.5 3,355,138 - -1.2 3,355,138 - -0.3 3,355,316 + +0.9 3,355,316 + -0.3 3,355,426 + SMc03746 0.65 +1.5 3,355,426 + SMc03746 0.65 -1.3 3,355,427 - SMc03746 0.66 -0.3 3,355,510 + -0.8 3,355,529 + -0.8 3,355,560 - +0.9 3,355,560 - +1.5 3,355,596 + -0.2 3,355,651 - +0.9 3,355,716 - -0.3 3,356,278 + +0.3 3,356,279 - +0.0 3,356,304 + -0.1 3,356,304 + -1.8 3,356,305 - -0.7 3,356,318 + +0.7 3,356,318 + +0.6 3,356,476 - +0.1 3,356,480 + +0.0 3,356,480 + +0.4 3,356,480 + +2.5 3,356,480 + +0.3 3,356,480 + -0.4 3,356,480 + -1.4 3,356,481 - +2.5 3,356,481 - +0.9 3,356,481 - +0.6
Or see this region's nucleotide sequence