Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02897 and SMc02898 are separated by 153 nucleotides SMc02898 and SMc02899 are separated by 24 nucleotides SMc02899 and SMc02900 are separated by 170 nucleotides SMc02900 and SMc02901 are separated by 131 nucleotides SMc02901 and SMc02902 are separated by 92 nucleotides
SMc02897: SMc02897 - cytochrome C transmembrane protein, at 254,271 to 255,050
SMc02897
SMc02898: SMc02898 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 255,204 to 255,956
SMc02898
SMc02899: SMc02899 - prephenate dehydratase, at 255,981 to 256,835
SMc02899
SMc02900: SMc02900 - hypothetical protein, at 257,006 to 257,143
SMc02900
SMc02901: SMc02901 - hypothetical protein, at 257,275 to 257,643
SMc02901
SMc02902: SMc02902 - transcriptional regulator, at 257,736 to 258,428
SMc02902
Position (kb) 255
256
257 Strain fitness (log2 ratio) -2
-1
0
1
2 at 255.040 kb on + strand at 255.041 kb on - strand at 255.041 kb on - strand at 255.115 kb on + strand at 255.116 kb on - strand at 255.116 kb on - strand at 255.191 kb on + strand at 255.191 kb on + strand at 255.192 kb on - strand at 256.211 kb on + strand, within SMc02899 at 256.224 kb on + strand, within SMc02899 at 256.301 kb on + strand, within SMc02899 at 256.302 kb on - strand, within SMc02899 at 256.599 kb on - strand, within SMc02899 at 256.615 kb on - strand, within SMc02899 at 256.671 kb on + strand, within SMc02899 at 256.671 kb on + strand, within SMc02899 at 256.672 kb on - strand, within SMc02899 at 256.672 kb on - strand, within SMc02899 at 256.707 kb on + strand, within SMc02899 at 256.707 kb on + strand, within SMc02899 at 256.707 kb on + strand, within SMc02899 at 256.738 kb on + strand, within SMc02899 at 256.738 kb on + strand, within SMc02899 at 256.738 kb on + strand, within SMc02899 at 256.738 kb on + strand, within SMc02899 at 256.738 kb on + strand, within SMc02899 at 256.738 kb on + strand, within SMc02899 at 256.739 kb on - strand, within SMc02899 at 256.953 kb on + strand at 256.953 kb on + strand at 256.976 kb on + strand at 256.976 kb on + strand at 256.977 kb on - strand at 256.977 kb on - strand at 256.977 kb on - strand at 257.037 kb on + strand, within SMc02900 at 257.101 kb on + strand, within SMc02900 at 257.101 kb on + strand, within SMc02900 at 257.141 kb on + strand at 257.229 kb on + strand at 257.243 kb on + strand at 257.429 kb on - strand, within SMc02901 at 257.615 kb on + strand at 257.615 kb on + strand at 257.615 kb on + strand at 257.616 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 255,040 + -2.3 255,041 - +0.5 255,041 - -2.2 255,115 + -2.3 255,116 - -0.9 255,116 - -0.3 255,191 + -0.5 255,191 + +0.8 255,192 - -0.1 256,211 + SMc02899 0.27 -0.8 256,224 + SMc02899 0.28 -1.4 256,301 + SMc02899 0.37 +0.4 256,302 - SMc02899 0.38 -0.6 256,599 - SMc02899 0.72 -0.4 256,615 - SMc02899 0.74 -1.2 256,671 + SMc02899 0.81 +0.9 256,671 + SMc02899 0.81 +0.1 256,672 - SMc02899 0.81 -0.5 256,672 - SMc02899 0.81 -0.0 256,707 + SMc02899 0.85 -0.4 256,707 + SMc02899 0.85 +0.0 256,707 + SMc02899 0.85 +0.6 256,738 + SMc02899 0.89 -0.6 256,738 + SMc02899 0.89 -1.1 256,738 + SMc02899 0.89 +0.0 256,738 + SMc02899 0.89 -1.4 256,738 + SMc02899 0.89 +0.3 256,738 + SMc02899 0.89 +0.2 256,739 - SMc02899 0.89 +1.8 256,953 + +0.0 256,953 + +0.4 256,976 + +1.2 256,976 + -0.7 256,977 - +1.5 256,977 - +0.5 256,977 - -0.2 257,037 + SMc02900 0.22 -1.0 257,101 + SMc02900 0.69 -0.3 257,101 + SMc02900 0.69 -0.2 257,141 + -0.6 257,229 + -0.9 257,243 + +0.1 257,429 - SMc02901 0.42 +0.8 257,615 + +0.5 257,615 + -0.5 257,615 + -0.8 257,616 - +0.3
Or see this region's nucleotide sequence