Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02864 and SMc02865 are separated by 7 nucleotides SMc02865 and SMc02866 overlap by 8 nucleotides SMc02866 and SMc02867 are separated by 61 nucleotides
SMc02864: SMc02864 - molybdopterin biosynthesis protein MoeB, at 217,960 to 218,724
SMc02864
SMc02865: SMc02865 - acetyltransferase, at 218,732 to 219,202
SMc02865
SMc02866: SMc02866 - transcriptional regulator, at 219,195 to 219,845
SMc02866
SMc02867: SMc02867 - multidrug-efflux system transmembrane protein, at 219,907 to 223,053
SMc02867
Position (kb) 219
220 Strain fitness (log2 ratio) -2
-1
0
1 at 218.332 kb on + strand, within SMc02864 at 218.332 kb on + strand, within SMc02864 at 218.333 kb on - strand, within SMc02864 at 218.367 kb on + strand, within SMc02864 at 218.375 kb on - strand, within SMc02864 at 218.570 kb on + strand, within SMc02864 at 218.669 kb on - strand at 218.669 kb on - strand at 218.960 kb on + strand, within SMc02865 at 218.961 kb on - strand, within SMc02865 at 218.961 kb on - strand, within SMc02865 at 219.007 kb on - strand, within SMc02865 at 219.497 kb on - strand, within SMc02866 at 219.703 kb on + strand, within SMc02866 at 219.815 kb on + strand at 219.816 kb on - strand at 219.816 kb on - strand at 219.848 kb on - strand at 219.884 kb on - strand at 219.909 kb on - strand at 220.292 kb on + strand, within SMc02867 at 220.613 kb on + strand, within SMc02867
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 218,332 + SMc02864 0.49 -0.0 218,332 + SMc02864 0.49 +0.1 218,333 - SMc02864 0.49 +0.5 218,367 + SMc02864 0.53 +1.1 218,375 - SMc02864 0.54 -0.2 218,570 + SMc02864 0.80 -0.7 218,669 - +0.1 218,669 - -0.5 218,960 + SMc02865 0.48 -0.0 218,961 - SMc02865 0.49 +0.3 218,961 - SMc02865 0.49 -0.8 219,007 - SMc02865 0.58 -0.4 219,497 - SMc02866 0.46 -1.2 219,703 + SMc02866 0.78 -1.0 219,815 + -0.7 219,816 - -0.4 219,816 - -1.4 219,848 - -0.4 219,884 - -0.6 219,909 - -2.7 220,292 + SMc02867 0.12 -1.2 220,613 + SMc02867 0.22 -1.2
Or see this region's nucleotide sequence