Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02579 and SMc02580 are separated by 130 nucleotides SMc02580 and SMc02581 are separated by 160 nucleotides
SMc02579: SMc02579 - cytochrome P450 monooxygenase, at 65,218 to 66,618
SMc02579
SMc02580: SMc02580 - hypothetical protein, at 66,749 to 68,755
SMc02580
SMc02581: SMc02581 - malate synthase G, at 68,916 to 71,087
SMc02581
Position (kb) 66
67
68
69 Strain fitness (log2 ratio) -2
-1
0
1 at 66.009 kb on + strand, within SMc02579 at 66.010 kb on - strand, within SMc02579 at 66.010 kb on - strand, within SMc02579 at 66.010 kb on - strand, within SMc02579 at 66.010 kb on - strand, within SMc02579 at 66.071 kb on - strand, within SMc02579 at 66.212 kb on - strand, within SMc02579 at 66.347 kb on - strand, within SMc02579 at 66.407 kb on + strand, within SMc02579 at 66.408 kb on - strand, within SMc02579 at 66.408 kb on - strand, within SMc02579 at 66.616 kb on + strand at 66.616 kb on + strand at 66.616 kb on + strand at 66.617 kb on - strand at 66.637 kb on - strand at 66.692 kb on + strand at 66.692 kb on + strand at 66.699 kb on + strand at 66.700 kb on - strand at 66.700 kb on - strand at 66.700 kb on - strand at 66.791 kb on + strand at 66.791 kb on + strand at 66.791 kb on + strand at 66.792 kb on - strand at 66.793 kb on + strand at 67.197 kb on - strand, within SMc02580 at 67.677 kb on - strand, within SMc02580 at 67.922 kb on + strand, within SMc02580 at 67.923 kb on - strand, within SMc02580 at 67.923 kb on - strand, within SMc02580 at 68.024 kb on - strand, within SMc02580 at 68.024 kb on - strand, within SMc02580 at 68.369 kb on + strand, within SMc02580 at 68.370 kb on - strand, within SMc02580 at 68.734 kb on + strand at 68.734 kb on + strand at 68.737 kb on - strand at 68.737 kb on - strand at 68.836 kb on + strand at 68.877 kb on - strand at 68.891 kb on + strand at 68.934 kb on + strand at 69.150 kb on + strand, within SMc02581 at 69.151 kb on - strand, within SMc02581 at 69.151 kb on - strand, within SMc02581 at 69.177 kb on + strand, within SMc02581 at 69.324 kb on + strand, within SMc02581 at 69.325 kb on - strand, within SMc02581 at 69.387 kb on + strand, within SMc02581 at 69.388 kb on - strand, within SMc02581 at 69.514 kb on + strand, within SMc02581
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 66,009 + SMc02579 0.56 -0.4 66,010 - SMc02579 0.57 -1.4 66,010 - SMc02579 0.57 -0.5 66,010 - SMc02579 0.57 -0.8 66,010 - SMc02579 0.57 -0.3 66,071 - SMc02579 0.61 -0.5 66,212 - SMc02579 0.71 -0.4 66,347 - SMc02579 0.81 -0.3 66,407 + SMc02579 0.85 -0.3 66,408 - SMc02579 0.85 -1.9 66,408 - SMc02579 0.85 -0.4 66,616 + +0.4 66,616 + -0.6 66,616 + -2.1 66,617 - +1.5 66,637 - -2.5 66,692 + -0.4 66,692 + +0.4 66,699 + -0.0 66,700 - -0.9 66,700 - -0.3 66,700 - +0.7 66,791 + +0.2 66,791 + +0.1 66,791 + +0.5 66,792 - -0.7 66,793 + -0.3 67,197 - SMc02580 0.22 -0.8 67,677 - SMc02580 0.46 -0.6 67,922 + SMc02580 0.58 +1.6 67,923 - SMc02580 0.58 -1.4 67,923 - SMc02580 0.58 -0.2 68,024 - SMc02580 0.64 -0.5 68,024 - SMc02580 0.64 -1.1 68,369 + SMc02580 0.81 +0.3 68,370 - SMc02580 0.81 -1.2 68,734 + -1.3 68,734 + -0.9 68,737 - -1.1 68,737 - -0.6 68,836 + -1.7 68,877 - -0.3 68,891 + -0.1 68,934 + +0.8 69,150 + SMc02581 0.11 -0.9 69,151 - SMc02581 0.11 +0.2 69,151 - SMc02581 0.11 -0.6 69,177 + SMc02581 0.12 -0.7 69,324 + SMc02581 0.19 -0.7 69,325 - SMc02581 0.19 +0.7 69,387 + SMc02581 0.22 -0.6 69,388 - SMc02581 0.22 +0.3 69,514 + SMc02581 0.28 -0.7
Or see this region's nucleotide sequence