Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02569 and SMc02570 overlap by 4 nucleotides SMc02570 and SMc02572 are separated by 32 nucleotides SMc02572 and SMc02573 overlap by 1 nucleotides SMc02573 and SMc02574 are separated by 26 nucleotides
SMc02569: SMc02569 - imidazole glycerol phosphate synthase subunit HisF, at 57,909 to 58,685
SMc02569
SMc02570: SMc02570 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) , at 58,682 to 59,425
SMc02570
SMc02572: SMc02572 - imidazole glycerol phosphate synthase subunit HisH, at 59,458 to 60,108
SMc02572
SMc02573: SMc02573 - hypothetical protein, at 60,108 to 60,581
SMc02573
SMc02574: SMc02574 - imidazoleglycerol-phosphate dehydratase, at 60,608 to 61,216
SMc02574
Position (kb)
59
60
61 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 58.567 kb on + strand, within SMc02569 at 58.665 kb on + strand at 58.685 kb on + strand at 58.685 kb on + strand at 58.686 kb on - strand at 58.686 kb on - strand at 58.932 kb on + strand, within SMc02570 at 58.932 kb on + strand, within SMc02570 at 58.932 kb on + strand, within SMc02570 at 58.932 kb on + strand, within SMc02570 at 58.933 kb on - strand, within SMc02570 at 58.933 kb on - strand, within SMc02570 at 59.343 kb on + strand, within SMc02570 at 59.343 kb on + strand, within SMc02570 at 59.344 kb on - strand, within SMc02570 at 59.344 kb on - strand, within SMc02570 at 59.627 kb on + strand, within SMc02572 at 59.627 kb on + strand, within SMc02572 at 59.628 kb on - strand, within SMc02572 at 60.232 kb on + strand, within SMc02573 at 60.233 kb on - strand, within SMc02573 at 60.572 kb on - strand at 60.572 kb on - strand at 60.572 kb on - strand at 60.598 kb on - strand at 60.598 kb on - strand at 60.598 kb on - strand at 60.736 kb on - strand, within SMc02574 at 60.736 kb on - strand at 60.927 kb on + strand, within SMc02574 at 60.928 kb on - strand, within SMc02574 at 61.084 kb on + strand, within SMc02574 at 61.084 kb on + strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574 at 61.085 kb on - strand, within SMc02574
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 58,567 + SMc02569 0.85 -0.1 58,665 + -0.3 58,685 + -0.9 58,685 + +0.5 58,686 - -0.9 58,686 - -0.5 58,932 + SMc02570 0.34 +0.0 58,932 + SMc02570 0.34 +0.1 58,932 + SMc02570 0.34 -1.3 58,932 + SMc02570 0.34 +0.3 58,933 - SMc02570 0.34 +0.2 58,933 - SMc02570 0.34 +0.2 59,343 + SMc02570 0.89 -0.7 59,343 + SMc02570 0.89 +0.2 59,344 - SMc02570 0.89 -1.8 59,344 - SMc02570 0.89 +0.3 59,627 + SMc02572 0.26 -0.9 59,627 + SMc02572 0.26 +0.6 59,628 - SMc02572 0.26 +0.1 60,232 + SMc02573 0.26 -2.4 60,233 - SMc02573 0.26 -0.3 60,572 - -0.1 60,572 - -0.1 60,572 - -0.8 60,598 - +0.9 60,598 - -0.1 60,598 - +1.8 60,736 - SMc02574 0.21 -0.2 60,736 - +1.5 60,927 + SMc02574 0.52 -2.5 60,928 - SMc02574 0.53 -0.4 61,084 + SMc02574 0.78 -0.5 61,084 + SMc02574 0.78 -3.3 61,085 - SMc02574 0.78 -0.1 61,085 - SMc02574 0.78 -0.2 61,085 - SMc02574 0.78 -0.3 61,085 - SMc02574 0.78 -1.9
Or see this region's nucleotide sequence