Strain Fitness in Sinorhizobium meliloti 1021 around SMc02554

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc02557 and SMc02556 are separated by 15 nucleotidesSMc02556 and SMc02555 are separated by 158 nucleotidesSMc02555 and SMc02554 overlap by 4 nucleotidesSMc02554 and SMc02553 overlap by 2 nucleotides SMc02557: SMc02557 - hypothetical protein, at 1,205,538 to 1,206,281 SMc02557 SMc02556: SMc02556 - hypothetical protein, at 1,206,297 to 1,206,566 SMc02556 SMc02555: SMc02555 - signal peptide protein, at 1,206,725 to 1,207,168 SMc02555 SMc02554: SMc02554 - hypothetical protein, at 1,207,165 to 1,207,629 SMc02554 SMc02553: SMc02553 - hypothetical protein, at 1,207,628 to 1,208,458 SMc02553 Position (kb) 1207 1208Strain fitness (log2 ratio) -1 0 1at 1206.579 kb on - strandat 1206.579 kb on - strandat 1206.651 kb on - strandat 1206.651 kb on - strandat 1206.671 kb on - strandat 1206.718 kb on + strandat 1206.719 kb on - strandat 1206.719 kb on - strandat 1206.727 kb on - strandat 1207.400 kb on - strand, within SMc02554at 1207.416 kb on - strand, within SMc02554at 1207.416 kb on - strand, within SMc02554at 1207.530 kb on - strand, within SMc02554at 1207.530 kb on - strand, within SMc02554at 1207.530 kb on - strand, within SMc02554at 1207.530 kb on - strand, within SMc02554at 1207.662 kb on - strandat 1207.662 kb on - strandat 1207.665 kb on - strandat 1207.665 kb on - strandat 1207.665 kb on - strandat 1207.665 kb on - strandat 1207.665 kb on - strandat 1207.992 kb on + strand, within SMc02553at 1207.993 kb on - strand, within SMc02553at 1207.993 kb on - strand, within SMc02553at 1208.164 kb on + strand, within SMc02553at 1208.309 kb on + strand, within SMc02553at 1208.391 kb on + strandat 1208.391 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,206,579 - +0.0
1,206,579 - +0.9
1,206,651 - +0.0
1,206,651 - -0.8
1,206,671 - -0.3
1,206,718 + -0.5
1,206,719 - -1.0
1,206,719 - -0.5
1,206,727 - +1.6
1,207,400 - SMc02554 0.51 +0.1
1,207,416 - SMc02554 0.54 +1.6
1,207,416 - SMc02554 0.54 +0.8
1,207,530 - SMc02554 0.78 +0.6
1,207,530 - SMc02554 0.78 +0.3
1,207,530 - SMc02554 0.78 +0.7
1,207,530 - SMc02554 0.78 +0.9
1,207,662 - -0.3
1,207,662 - +0.6
1,207,665 - +1.5
1,207,665 - +0.9
1,207,665 - +0.7
1,207,665 - +0.4
1,207,665 - +1.3
1,207,992 + SMc02553 0.44 -0.5
1,207,993 - SMc02553 0.44 +1.1
1,207,993 - SMc02553 0.44 +0.5
1,208,164 + SMc02553 0.65 +0.7
1,208,309 + SMc02553 0.82 +0.4
1,208,391 + +0.2
1,208,391 + -0.3

Or see this region's nucleotide sequence