Strain Fitness in Sinorhizobium meliloti 1021 around SMc02504
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
3,287,624 | + | -0.4 | |||
3,287,624 | + | +1.8 | |||
3,287,625 | - | +0.0 | |||
3,287,663 | + | +0.7 | |||
3,287,894 | + | SMc02505 | 0.22 | +1.0 | |
3,288,185 | + | SMc02505 | 0.55 | -0.7 | |
3,288,597 | + | -0.6 | |||
3,288,598 | - | -0.9 | |||
3,288,598 | - | -0.4 | |||
3,288,852 | + | SMc02504 | 0.56 | +3.1 | |
3,288,852 | + | SMc02504 | 0.56 | +3.1 | |
3,288,853 | - | SMc02504 | 0.56 | +3.5 | |
3,288,884 | + | SMc02504 | 0.63 | +4.1 | |
3,289,052 | - | +4.8 | |||
3,289,103 | + | +2.7 | |||
3,289,139 | - | +4.5 | |||
3,289,220 | + | +2.1 | |||
3,289,230 | + | +3.9 | |||
3,289,336 | + | SMc02503 | 0.16 | +4.9 | |
3,289,639 | - | SMc02503 | 0.44 | +4.7 | |
3,289,677 | + | SMc02503 | 0.47 | +6.6 | |
3,289,677 | + | SMc02503 | 0.47 | +5.8 | |
3,289,677 | + | SMc02503 | 0.47 | +4.4 | |
3,289,678 | - | SMc02503 | 0.47 | +4.6 | |
3,289,680 | - | SMc02503 | 0.48 | +6.1 | |
3,289,770 | + | SMc02503 | 0.56 | +4.4 | |
3,289,845 | + | SMc02503 | 0.62 | +4.8 | |
3,289,846 | - | SMc02503 | 0.63 | +4.9 | |
3,290,035 | - | SMc02503 | 0.80 | +7.5 | |
3,290,049 | + | SMc02503 | 0.81 | +6.4 | |
3,290,050 | - | SMc02503 | 0.81 | +7.2 |
Or see this region's nucleotide sequence