Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01994 and SMc01959 overlap by 4 nucleotides SMc01959 and SMc01960 are separated by 354 nucleotides SMc01960 and SMc01961 are separated by 126 nucleotides
SMc01994: SMc01994 - transposase ISRM1, at 2,681,043 to 2,681,873
SMc01994
SMc01959: SMc01959 - transposase ISRM1, at 2,681,870 to 2,682,241
SMc01959
SMc01960: SMc01960 - oxidoreductase, at 2,682,596 to 2,683,162
SMc01960
SMc01961: SMc01961 - hypothetical protein, at 2,683,289 to 2,684,242
SMc01961
Position (kb)
2682
2683
2684 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2682.288 kb on + strand at 2682.288 kb on + strand at 2682.292 kb on + strand at 2682.292 kb on + strand at 2682.292 kb on + strand at 2682.473 kb on + strand at 2682.593 kb on - strand at 2682.851 kb on + strand, within SMc01960 at 2682.851 kb on + strand, within SMc01960 at 2682.851 kb on + strand, within SMc01960 at 2682.851 kb on + strand, within SMc01960 at 2682.851 kb on + strand, within SMc01960 at 2682.852 kb on - strand, within SMc01960 at 2682.852 kb on - strand, within SMc01960 at 2682.918 kb on + strand, within SMc01960 at 2682.919 kb on - strand, within SMc01960 at 2683.020 kb on + strand, within SMc01960 at 2683.022 kb on + strand, within SMc01960 at 2683.022 kb on + strand, within SMc01960 at 2683.449 kb on + strand, within SMc01961 at 2683.464 kb on + strand, within SMc01961 at 2683.464 kb on + strand, within SMc01961 at 2683.465 kb on - strand, within SMc01961 at 2683.692 kb on + strand, within SMc01961 at 2684.094 kb on + strand, within SMc01961 at 2684.095 kb on - strand, within SMc01961 at 2684.106 kb on + strand, within SMc01961 at 2684.106 kb on + strand, within SMc01961 at 2684.106 kb on + strand, within SMc01961 at 2684.106 kb on + strand, within SMc01961 at 2684.107 kb on - strand, within SMc01961 at 2684.107 kb on - strand, within SMc01961 at 2684.107 kb on - strand, within SMc01961 at 2684.107 kb on - strand, within SMc01961
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,682,288 + -0.7 2,682,288 + -0.6 2,682,292 + +0.7 2,682,292 + -0.1 2,682,292 + -1.8 2,682,473 + -1.3 2,682,593 - -0.0 2,682,851 + SMc01960 0.45 -0.2 2,682,851 + SMc01960 0.45 +0.0 2,682,851 + SMc01960 0.45 -0.8 2,682,851 + SMc01960 0.45 +0.4 2,682,851 + SMc01960 0.45 -1.3 2,682,852 - SMc01960 0.45 -0.2 2,682,852 - SMc01960 0.45 +2.3 2,682,918 + SMc01960 0.57 -0.1 2,682,919 - SMc01960 0.57 +0.1 2,683,020 + SMc01960 0.75 +0.8 2,683,022 + SMc01960 0.75 -0.6 2,683,022 + SMc01960 0.75 +0.1 2,683,449 + SMc01961 0.17 +0.9 2,683,464 + SMc01961 0.18 -0.3 2,683,464 + SMc01961 0.18 +0.1 2,683,465 - SMc01961 0.18 +0.3 2,683,692 + SMc01961 0.42 -0.5 2,684,094 + SMc01961 0.84 +0.2 2,684,095 - SMc01961 0.84 -1.2 2,684,106 + SMc01961 0.86 -1.0 2,684,106 + SMc01961 0.86 +0.7 2,684,106 + SMc01961 0.86 -1.0 2,684,106 + SMc01961 0.86 -1.7 2,684,107 - SMc01961 0.86 -0.4 2,684,107 - SMc01961 0.86 -1.8 2,684,107 - SMc01961 0.86 -0.2 2,684,107 - SMc01961 0.86 -0.5
Or see this region's nucleotide sequence