Strain Fitness in Sinorhizobium meliloti 1021 around SMc01903

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04448 and SMc01903 are separated by 276 nucleotidesSMc01903 and SMc01904 are separated by 293 nucleotides SMc04448: SMc04448 - hypothetical protein, at 1,360,238 to 1,361,803 SMc04448 SMc01903: SMc01903 - ATP-dependent Clp protease proteolytic subunit, at 1,362,080 to 1,362,706 SMc01903 SMc01904: SMc01904 - ATP-dependent protease ATP-binding subunit ClpX, at 1,363,000 to 1,364,277 SMc01904 Position (kb) 1362 1363Strain fitness (log2 ratio) -1 0 1at 1361.316 kb on + strand, within SMc04448at 1361.367 kb on - strand, within SMc04448at 1361.376 kb on - strand, within SMc04448at 1361.411 kb on + strand, within SMc04448at 1361.452 kb on + strand, within SMc04448at 1361.453 kb on - strand, within SMc04448at 1361.453 kb on - strand, within SMc04448at 1361.654 kb on + strandat 1361.654 kb on + strandat 1361.654 kb on + strandat 1361.654 kb on + strandat 1362.007 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,361,316 + SMc04448 0.69 +0.0
1,361,367 - SMc04448 0.72 +0.4
1,361,376 - SMc04448 0.73 +0.7
1,361,411 + SMc04448 0.75 +0.4
1,361,452 + SMc04448 0.78 +0.8
1,361,453 - SMc04448 0.78 +0.0
1,361,453 - SMc04448 0.78 +0.1
1,361,654 + +0.7
1,361,654 + +1.1
1,361,654 + +0.2
1,361,654 + +0.4
1,362,007 + -1.1

Or see this region's nucleotide sequence