Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01796 and SMc01797 are separated by 281 nucleotides SMc01797 and SMc01798 are separated by 3 nucleotides SMc01798 and SMc01799 are separated by 11 nucleotides
SMc01796: SMc01796 - hypothetical protein, at 1,343,639 to 1,344,892
SMc01796
SMc01797: SMc01797 - acetyltransferase, at 1,345,174 to 1,345,824
SMc01797
SMc01798: SMc01798 - hypothetical protein, at 1,345,828 to 1,346,568
SMc01798
SMc01799: SMc01799 - signal peptide protein, at 1,346,580 to 1,346,768
SMc01799
Position (kb)
1345
1346 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1344.234 kb on + strand, within SMc01796 at 1344.234 kb on + strand, within SMc01796 at 1344.235 kb on - strand, within SMc01796 at 1344.235 kb on - strand, within SMc01796 at 1344.235 kb on - strand, within SMc01796 at 1344.948 kb on + strand at 1344.996 kb on + strand at 1344.997 kb on - strand at 1345.044 kb on - strand at 1345.044 kb on - strand at 1345.137 kb on + strand at 1345.138 kb on - strand at 1345.138 kb on - strand at 1345.138 kb on - strand at 1345.172 kb on + strand at 1345.345 kb on + strand, within SMc01797 at 1345.345 kb on + strand, within SMc01797 at 1345.351 kb on + strand, within SMc01797 at 1345.352 kb on - strand, within SMc01797 at 1345.352 kb on - strand, within SMc01797 at 1345.409 kb on + strand, within SMc01797 at 1345.410 kb on - strand, within SMc01797 at 1345.410 kb on - strand, within SMc01797 at 1345.410 kb on - strand, within SMc01797 at 1345.410 kb on - strand, within SMc01797 at 1345.419 kb on + strand, within SMc01797 at 1345.654 kb on + strand, within SMc01797 at 1345.655 kb on - strand, within SMc01797 at 1345.822 kb on + strand at 1345.970 kb on + strand, within SMc01798 at 1346.028 kb on - strand, within SMc01798 at 1346.133 kb on + strand, within SMc01798 at 1346.210 kb on + strand, within SMc01798 at 1346.210 kb on + strand, within SMc01798 at 1346.210 kb on + strand, within SMc01798 at 1346.210 kb on + strand, within SMc01798 at 1346.211 kb on - strand, within SMc01798 at 1346.372 kb on + strand, within SMc01798 at 1346.569 kb on - strand at 1346.662 kb on + strand, within SMc01799 at 1346.663 kb on - strand, within SMc01799 at 1346.731 kb on + strand, within SMc01799 at 1346.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,344,234 + SMc01796 0.47 +0.2 1,344,234 + SMc01796 0.47 -0.3 1,344,235 - SMc01796 0.48 -0.4 1,344,235 - SMc01796 0.48 -1.0 1,344,235 - SMc01796 0.48 +0.6 1,344,948 + +0.9 1,344,996 + -2.2 1,344,997 - +1.8 1,345,044 - +1.9 1,345,044 - -0.5 1,345,137 + -0.7 1,345,138 - -0.8 1,345,138 - -0.4 1,345,138 - -0.8 1,345,172 + -0.1 1,345,345 + SMc01797 0.26 -0.1 1,345,345 + SMc01797 0.26 -0.7 1,345,351 + SMc01797 0.27 +0.8 1,345,352 - SMc01797 0.27 +0.7 1,345,352 - SMc01797 0.27 -0.0 1,345,409 + SMc01797 0.36 -0.0 1,345,410 - SMc01797 0.36 -1.7 1,345,410 - SMc01797 0.36 -0.2 1,345,410 - SMc01797 0.36 -0.7 1,345,410 - SMc01797 0.36 -0.0 1,345,419 + SMc01797 0.38 -0.7 1,345,654 + SMc01797 0.74 -0.3 1,345,655 - SMc01797 0.74 -0.3 1,345,822 + +0.2 1,345,970 + SMc01798 0.19 -0.5 1,346,028 - SMc01798 0.27 -2.8 1,346,133 + SMc01798 0.41 -0.3 1,346,210 + SMc01798 0.52 -0.1 1,346,210 + SMc01798 0.52 -0.2 1,346,210 + SMc01798 0.52 +0.3 1,346,210 + SMc01798 0.52 +0.1 1,346,211 - SMc01798 0.52 -0.3 1,346,372 + SMc01798 0.73 -0.1 1,346,569 - +0.4 1,346,662 + SMc01799 0.43 +0.4 1,346,663 - SMc01799 0.44 -1.0 1,346,731 + SMc01799 0.80 +0.2 1,346,785 - -1.9
Or see this region's nucleotide sequence