Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01507 and SMc01506 are separated by 293 nucleotides SMc01506 and SMc01505 are separated by 7 nucleotides SMc01505 and SMc01504 are separated by 160 nucleotides
SMc01507: SMc01507 - hypothetical protein, at 2,621,661 to 2,623,166
SMc01507
SMc01506: SMc01506 - RNA polymerase sigma factor, at 2,623,460 to 2,624,014
SMc01506
SMc01505: SMc01505 - hypothetical protein, at 2,624,022 to 2,624,189
SMc01505
SMc01504: SMc01504 - two-component response regulator, at 2,624,350 to 2,625,144
SMc01504
Position (kb)
2624
2625 Strain fitness (log2 ratio)
-1
0
1 at 2623.257 kb on - strand at 2623.357 kb on + strand at 2623.358 kb on - strand at 2623.364 kb on + strand at 2623.365 kb on - strand at 2623.365 kb on - strand at 2623.365 kb on - strand at 2623.365 kb on - strand at 2623.365 kb on - strand at 2623.365 kb on - strand at 2623.414 kb on + strand at 2623.722 kb on + strand, within SMc01506 at 2623.722 kb on + strand, within SMc01506 at 2623.722 kb on + strand, within SMc01506 at 2623.723 kb on - strand, within SMc01506 at 2623.723 kb on - strand, within SMc01506 at 2623.723 kb on - strand, within SMc01506 at 2623.723 kb on - strand, within SMc01506 at 2623.723 kb on - strand, within SMc01506 at 2623.807 kb on - strand, within SMc01506 at 2623.807 kb on - strand, within SMc01506 at 2624.076 kb on + strand, within SMc01505 at 2624.122 kb on + strand, within SMc01505 at 2624.209 kb on + strand at 2624.253 kb on + strand at 2624.320 kb on + strand at 2624.367 kb on + strand at 2624.367 kb on + strand at 2624.368 kb on - strand at 2624.386 kb on + strand at 2624.399 kb on - strand at 2624.440 kb on + strand, within SMc01504 at 2624.440 kb on + strand, within SMc01504 at 2624.440 kb on + strand, within SMc01504 at 2624.441 kb on - strand, within SMc01504 at 2624.467 kb on - strand, within SMc01504 at 2624.467 kb on - strand, within SMc01504 at 2624.510 kb on + strand, within SMc01504 at 2624.511 kb on - strand, within SMc01504 at 2624.693 kb on + strand, within SMc01504 at 2624.693 kb on + strand, within SMc01504 at 2624.694 kb on - strand, within SMc01504 at 2624.703 kb on - strand, within SMc01504
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,623,257 - +0.4 2,623,357 + -0.9 2,623,358 - -0.6 2,623,364 + -0.3 2,623,365 - -0.1 2,623,365 - +0.4 2,623,365 - -0.1 2,623,365 - +0.7 2,623,365 - +0.6 2,623,365 - +0.2 2,623,414 + -0.6 2,623,722 + SMc01506 0.47 -0.7 2,623,722 + SMc01506 0.47 -0.1 2,623,722 + SMc01506 0.47 -0.6 2,623,723 - SMc01506 0.47 -1.3 2,623,723 - SMc01506 0.47 +0.3 2,623,723 - SMc01506 0.47 +0.9 2,623,723 - SMc01506 0.47 +0.6 2,623,723 - SMc01506 0.47 -0.5 2,623,807 - SMc01506 0.63 -0.4 2,623,807 - SMc01506 0.63 -0.1 2,624,076 + SMc01505 0.32 -1.0 2,624,122 + SMc01505 0.60 -1.2 2,624,209 + -0.7 2,624,253 + -1.5 2,624,320 + +0.5 2,624,367 + +0.3 2,624,367 + -0.0 2,624,368 - -0.2 2,624,386 + +0.7 2,624,399 - -0.0 2,624,440 + SMc01504 0.11 +0.7 2,624,440 + SMc01504 0.11 +0.5 2,624,440 + SMc01504 0.11 +0.6 2,624,441 - SMc01504 0.11 +0.3 2,624,467 - SMc01504 0.15 +0.3 2,624,467 - SMc01504 0.15 -0.6 2,624,510 + SMc01504 0.20 +0.7 2,624,511 - SMc01504 0.20 +0.1 2,624,693 + SMc01504 0.43 +0.8 2,624,693 + SMc01504 0.43 -0.4 2,624,694 - SMc01504 0.43 -1.4 2,624,703 - SMc01504 0.44 -1.3
Or see this region's nucleotide sequence