Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01501 and SMc01500 are separated by 26 nucleotides SMc01500 and SMc01499 overlap by 4 nucleotides
SMc01501: SMc01501 - mannitol 2-dehydrogenase, at 2,627,865 to 2,629,349
SMc01501
SMc01500: SMc01500 - sorbitol dehydrogenase, at 2,629,376 to 2,630,149
SMc01500
SMc01499: SMc01499 - ATP-binding transport ABC transporter protein, at 2,630,146 to 2,631,147
SMc01499
Position (kb)
2629
2630
2631 Strain fitness (log2 ratio)
-1
0
1
2 at 2628.777 kb on - strand, within SMc01501 at 2629.210 kb on + strand at 2629.406 kb on - strand at 2629.407 kb on + strand at 2629.407 kb on + strand at 2629.407 kb on + strand at 2629.407 kb on + strand at 2629.408 kb on - strand at 2629.425 kb on + strand at 2629.426 kb on - strand at 2629.426 kb on - strand at 2629.549 kb on - strand, within SMc01500 at 2629.692 kb on + strand, within SMc01500 at 2629.692 kb on + strand, within SMc01500 at 2629.693 kb on - strand, within SMc01500 at 2629.693 kb on - strand, within SMc01500 at 2629.839 kb on + strand, within SMc01500 at 2629.840 kb on - strand, within SMc01500 at 2629.986 kb on + strand, within SMc01500 at 2630.073 kb on + strand at 2630.098 kb on + strand at 2630.207 kb on + strand at 2630.207 kb on + strand at 2630.208 kb on - strand at 2630.262 kb on + strand, within SMc01499 at 2630.263 kb on - strand, within SMc01499 at 2630.364 kb on + strand, within SMc01499 at 2630.364 kb on + strand, within SMc01499 at 2630.364 kb on + strand, within SMc01499 at 2630.364 kb on + strand, within SMc01499 at 2630.364 kb on + strand, within SMc01499 at 2630.365 kb on - strand, within SMc01499 at 2630.365 kb on - strand, within SMc01499 at 2630.365 kb on - strand, within SMc01499 at 2630.365 kb on - strand, within SMc01499 at 2630.483 kb on + strand, within SMc01499 at 2630.582 kb on + strand, within SMc01499 at 2630.582 kb on + strand, within SMc01499 at 2630.583 kb on - strand, within SMc01499 at 2630.662 kb on - strand, within SMc01499 at 2630.771 kb on + strand, within SMc01499 at 2630.772 kb on - strand, within SMc01499 at 2630.880 kb on + strand, within SMc01499 at 2630.881 kb on - strand, within SMc01499 at 2630.888 kb on + strand, within SMc01499 at 2630.897 kb on + strand, within SMc01499 at 2630.898 kb on - strand, within SMc01499 at 2631.082 kb on + strand at 2631.082 kb on + strand at 2631.082 kb on + strand at 2631.082 kb on + strand at 2631.121 kb on + strand at 2631.122 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,628,777 - SMc01501 0.61 -1.0 2,629,210 + +0.7 2,629,406 - -1.1 2,629,407 + -0.2 2,629,407 + -0.2 2,629,407 + +0.4 2,629,407 + +0.2 2,629,408 - -0.4 2,629,425 + -0.3 2,629,426 - -0.4 2,629,426 - -0.2 2,629,549 - SMc01500 0.22 +0.0 2,629,692 + SMc01500 0.41 -0.2 2,629,692 + SMc01500 0.41 -0.1 2,629,693 - SMc01500 0.41 +0.1 2,629,693 - SMc01500 0.41 -0.3 2,629,839 + SMc01500 0.60 -0.1 2,629,840 - SMc01500 0.60 -0.4 2,629,986 + SMc01500 0.79 +0.4 2,630,073 + +0.2 2,630,098 + -0.3 2,630,207 + -0.1 2,630,207 + -0.5 2,630,208 - -0.5 2,630,262 + SMc01499 0.12 +0.2 2,630,263 - SMc01499 0.12 +1.0 2,630,364 + SMc01499 0.22 +1.1 2,630,364 + SMc01499 0.22 +0.2 2,630,364 + SMc01499 0.22 -0.5 2,630,364 + SMc01499 0.22 +2.3 2,630,364 + SMc01499 0.22 -0.5 2,630,365 - SMc01499 0.22 +0.1 2,630,365 - SMc01499 0.22 +0.7 2,630,365 - SMc01499 0.22 +2.3 2,630,365 - SMc01499 0.22 -0.9 2,630,483 + SMc01499 0.34 +0.8 2,630,582 + SMc01499 0.44 +0.4 2,630,582 + SMc01499 0.44 -0.3 2,630,583 - SMc01499 0.44 +1.2 2,630,662 - SMc01499 0.51 +0.8 2,630,771 + SMc01499 0.62 -0.9 2,630,772 - SMc01499 0.62 +0.3 2,630,880 + SMc01499 0.73 -0.1 2,630,881 - SMc01499 0.73 -0.2 2,630,888 + SMc01499 0.74 -0.0 2,630,897 + SMc01499 0.75 +0.3 2,630,898 - SMc01499 0.75 -1.0 2,631,082 + -0.3 2,631,082 + -0.1 2,631,082 + -0.9 2,631,082 + -0.5 2,631,121 + -0.3 2,631,122 - -0.1
Or see this region's nucleotide sequence