Strain Fitness in Sinorhizobium meliloti 1021 around SMc00621

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00620 and SMc00621 are separated by 70 nucleotidesSMc00621 and SMc00622 are separated by 205 nucleotides SMc00620: SMc00620 - signal peptide protein, at 1,293,997 to 1,295,355 SMc00620 SMc00621: SMc00621 - adenylate cyclase 2 protein, at 1,295,426 to 1,296,517 SMc00621 SMc00622: SMc00622 - ribonuclease D protein, at 1,296,723 to 1,297,874 SMc00622 Position (kb) 1295 1296 1297Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1294.454 kb on + strand, within SMc00620at 1294.455 kb on - strand, within SMc00620at 1294.455 kb on - strand, within SMc00620at 1294.581 kb on - strand, within SMc00620at 1294.581 kb on - strand, within SMc00620at 1294.776 kb on - strand, within SMc00620at 1294.857 kb on - strand, within SMc00620at 1295.356 kb on - strandat 1295.427 kb on + strandat 1295.697 kb on + strand, within SMc00621at 1295.910 kb on + strand, within SMc00621at 1295.910 kb on + strand, within SMc00621at 1295.910 kb on + strand, within SMc00621at 1295.910 kb on + strand, within SMc00621at 1295.931 kb on + strand, within SMc00621at 1295.976 kb on + strand, within SMc00621at 1295.976 kb on + strand, within SMc00621at 1295.976 kb on + strand, within SMc00621at 1295.977 kb on - strand, within SMc00621at 1296.168 kb on + strand, within SMc00621at 1296.169 kb on - strand, within SMc00621at 1296.275 kb on + strand, within SMc00621at 1296.282 kb on + strand, within SMc00621at 1296.432 kb on + strandat 1296.447 kb on + strandat 1296.447 kb on + strandat 1296.447 kb on + strandat 1296.447 kb on + strandat 1296.448 kb on - strandat 1296.448 kb on - strandat 1296.560 kb on - strandat 1296.560 kb on - strandat 1296.560 kb on - strandat 1296.598 kb on + strandat 1296.599 kb on - strandat 1296.599 kb on - strandat 1296.599 kb on - strandat 1296.599 kb on - strandat 1296.599 kb on - strandat 1297.310 kb on - strand, within SMc00622at 1297.310 kb on - strand, within SMc00622at 1297.310 kb on - strand, within SMc00622at 1297.310 kb on - strand, within SMc00622at 1297.390 kb on + strand, within SMc00622at 1297.390 kb on + strand, within SMc00622at 1297.391 kb on - strand, within SMc00622at 1297.396 kb on + strand, within SMc00622at 1297.396 kb on + strand, within SMc00622at 1297.397 kb on - strand, within SMc00622at 1297.397 kb on - strand, within SMc00622at 1297.397 kb on - strand, within SMc00622at 1297.400 kb on + strand, within SMc00622at 1297.401 kb on - strand, within SMc00622at 1297.432 kb on + strand, within SMc00622

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,294,454 + SMc00620 0.34 +3.0
1,294,455 - SMc00620 0.34 +0.1
1,294,455 - SMc00620 0.34 -2.2
1,294,581 - SMc00620 0.43 +0.2
1,294,581 - SMc00620 0.43 +0.2
1,294,776 - SMc00620 0.57 -0.7
1,294,857 - SMc00620 0.63 +0.6
1,295,356 - -0.5
1,295,427 + +0.1
1,295,697 + SMc00621 0.25 -0.7
1,295,910 + SMc00621 0.44 -0.7
1,295,910 + SMc00621 0.44 -1.5
1,295,910 + SMc00621 0.44 +0.1
1,295,910 + SMc00621 0.44 -0.1
1,295,931 + SMc00621 0.46 -0.1
1,295,976 + SMc00621 0.50 +1.1
1,295,976 + SMc00621 0.50 -0.6
1,295,976 + SMc00621 0.50 -0.1
1,295,977 - SMc00621 0.50 +0.0
1,296,168 + SMc00621 0.68 +0.2
1,296,169 - SMc00621 0.68 +0.0
1,296,275 + SMc00621 0.78 +0.1
1,296,282 + SMc00621 0.78 +0.5
1,296,432 + -0.6
1,296,447 + -1.5
1,296,447 + +0.8
1,296,447 + -0.1
1,296,447 + +0.6
1,296,448 - -0.3
1,296,448 - +0.3
1,296,560 - +0.2
1,296,560 - +1.2
1,296,560 - -0.8
1,296,598 + +1.4
1,296,599 - -0.5
1,296,599 - -1.5
1,296,599 - +0.8
1,296,599 - -0.4
1,296,599 - -0.7
1,297,310 - SMc00622 0.51 -0.4
1,297,310 - SMc00622 0.51 +1.9
1,297,310 - SMc00622 0.51 +1.3
1,297,310 - SMc00622 0.51 +1.4
1,297,390 + SMc00622 0.58 +1.2
1,297,390 + SMc00622 0.58 +1.6
1,297,391 - SMc00622 0.58 +1.3
1,297,396 + SMc00622 0.58 +1.5
1,297,396 + SMc00622 0.58 +1.2
1,297,397 - SMc00622 0.59 +2.3
1,297,397 - SMc00622 0.59 +2.4
1,297,397 - SMc00622 0.59 +1.5
1,297,400 + SMc00622 0.59 +1.6
1,297,401 - SMc00622 0.59 +1.9
1,297,432 + SMc00622 0.62 +2.1

Or see this region's nucleotide sequence