Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00350 and SMc00351 are separated by 175 nucleotides SMc00351 and SMc00352 are separated by 1 nucleotides SMc00352 and SMc00353 are separated by 35 nucleotides
SMc00350: SMc00350 - transport transmembrane protein, at 305,507 to 306,772
SMc00350
SMc00351: SMc00351 - hypothetical protein, at 306,948 to 307,541
SMc00351
SMc00352: SMc00352 - acetyltransferase, at 307,543 to 308,070
SMc00352
SMc00353: SMc00353 - transmembrane protein, at 308,106 to 308,828
SMc00353
Position (kb) 306
307
308 Strain fitness (log2 ratio) -2
-1
0
1 at 305.954 kb on - strand, within SMc00350 at 305.954 kb on - strand, within SMc00350 at 306.060 kb on - strand, within SMc00350 at 306.060 kb on - strand, within SMc00350 at 306.094 kb on - strand, within SMc00350 at 306.103 kb on + strand, within SMc00350 at 306.348 kb on + strand, within SMc00350 at 306.348 kb on + strand, within SMc00350 at 306.348 kb on + strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.349 kb on - strand, within SMc00350 at 306.357 kb on + strand, within SMc00350 at 306.357 kb on + strand, within SMc00350 at 306.358 kb on - strand, within SMc00350 at 306.358 kb on - strand, within SMc00350 at 306.454 kb on - strand, within SMc00350 at 306.561 kb on - strand, within SMc00350 at 306.681 kb on + strand at 306.732 kb on - strand at 306.732 kb on - strand at 306.908 kb on + strand at 306.909 kb on - strand at 307.252 kb on - strand, within SMc00351 at 307.509 kb on + strand at 307.510 kb on - strand at 307.781 kb on - strand, within SMc00352 at 307.963 kb on + strand, within SMc00352 at 307.963 kb on + strand, within SMc00352 at 307.964 kb on - strand, within SMc00352 at 308.030 kb on - strand at 308.050 kb on + strand at 308.068 kb on + strand at 308.068 kb on + strand at 308.068 kb on + strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.069 kb on - strand at 308.155 kb on + strand at 308.398 kb on + strand, within SMc00353 at 308.399 kb on - strand, within SMc00353 at 308.399 kb on - strand, within SMc00353
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 305,954 - SMc00350 0.35 +0.0 305,954 - SMc00350 0.35 -1.7 306,060 - SMc00350 0.44 -0.3 306,060 - SMc00350 0.44 +0.5 306,094 - SMc00350 0.46 -0.1 306,103 + SMc00350 0.47 -0.5 306,348 + SMc00350 0.66 +0.7 306,348 + SMc00350 0.66 -0.5 306,348 + SMc00350 0.66 -0.8 306,349 - SMc00350 0.67 -0.4 306,349 - SMc00350 0.67 +0.2 306,349 - SMc00350 0.67 +0.3 306,349 - SMc00350 0.67 -0.1 306,357 + SMc00350 0.67 +0.5 306,357 + SMc00350 0.67 +0.1 306,358 - SMc00350 0.67 -0.2 306,358 - SMc00350 0.67 -0.4 306,454 - SMc00350 0.75 -0.8 306,561 - SMc00350 0.83 +0.7 306,681 + +0.2 306,732 - -0.1 306,732 - -0.1 306,908 + -0.5 306,909 - -0.5 307,252 - SMc00351 0.51 -0.7 307,509 + +0.8 307,510 - +0.4 307,781 - SMc00352 0.45 -0.2 307,963 + SMc00352 0.80 -0.3 307,963 + SMc00352 0.80 +0.9 307,964 - SMc00352 0.80 +0.8 308,030 - +0.5 308,050 + -1.3 308,068 + -0.2 308,068 + +0.5 308,068 + -0.4 308,069 - -2.0 308,069 - -0.9 308,069 - +0.7 308,069 - -0.1 308,069 - +0.1 308,155 + -0.8 308,398 + SMc00353 0.40 -0.2 308,399 - SMc00353 0.41 -0.0 308,399 - SMc00353 0.41 -0.2
Or see this region's nucleotide sequence