Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00163 and SMc00162 are separated by 10 nucleotides SMc00162 and SMc00161 are separated by 2 nucleotides
SMc00163: SMc00163 - transcriptional regulator, at 2,002,291 to 2,003,313
SMc00163
SMc00162: SMc00162 - hypothetical protein, at 2,003,324 to 2,004,151
SMc00162
SMc00161: SMc00161 - NAD synthetase, at 2,004,154 to 2,005,836
SMc00161
Position (kb)
2003
2004
2005 Strain fitness (log2 ratio)
-1
0
1 at 2002.342 kb on - strand at 2002.455 kb on - strand, within SMc00163 at 2002.468 kb on + strand, within SMc00163 at 2002.469 kb on - strand, within SMc00163 at 2002.558 kb on - strand, within SMc00163 at 2002.655 kb on + strand, within SMc00163 at 2002.655 kb on + strand, within SMc00163 at 2002.656 kb on - strand, within SMc00163 at 2002.656 kb on - strand, within SMc00163 at 2002.771 kb on + strand, within SMc00163 at 2002.772 kb on - strand, within SMc00163 at 2002.813 kb on + strand, within SMc00163 at 2002.942 kb on - strand, within SMc00163 at 2003.041 kb on + strand, within SMc00163 at 2003.283 kb on - strand at 2003.326 kb on - strand at 2003.340 kb on + strand at 2003.345 kb on + strand at 2003.505 kb on + strand, within SMc00162 at 2003.505 kb on + strand, within SMc00162 at 2003.506 kb on - strand, within SMc00162 at 2003.563 kb on - strand, within SMc00162 at 2003.605 kb on + strand, within SMc00162 at 2003.649 kb on + strand, within SMc00162 at 2003.649 kb on + strand, within SMc00162 at 2003.649 kb on + strand, within SMc00162 at 2003.650 kb on - strand, within SMc00162 at 2003.739 kb on - strand, within SMc00162 at 2003.745 kb on + strand, within SMc00162 at 2003.745 kb on + strand, within SMc00162 at 2003.745 kb on + strand, within SMc00162 at 2003.746 kb on - strand, within SMc00162 at 2003.746 kb on - strand, within SMc00162 at 2003.746 kb on - strand, within SMc00162 at 2003.746 kb on - strand, within SMc00162 at 2003.746 kb on - strand, within SMc00162 at 2003.778 kb on + strand, within SMc00162 at 2003.778 kb on + strand, within SMc00162 at 2003.817 kb on + strand, within SMc00162 at 2003.874 kb on + strand, within SMc00162 at 2003.874 kb on + strand, within SMc00162 at 2003.875 kb on - strand, within SMc00162
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,002,342 - -0.7 2,002,455 - SMc00163 0.16 -0.1 2,002,468 + SMc00163 0.17 -0.9 2,002,469 - SMc00163 0.17 +0.3 2,002,558 - SMc00163 0.26 +0.4 2,002,655 + SMc00163 0.36 -1.7 2,002,655 + SMc00163 0.36 -1.5 2,002,656 - SMc00163 0.36 -0.1 2,002,656 - SMc00163 0.36 +0.5 2,002,771 + SMc00163 0.47 -0.1 2,002,772 - SMc00163 0.47 -0.7 2,002,813 + SMc00163 0.51 -0.6 2,002,942 - SMc00163 0.64 -0.5 2,003,041 + SMc00163 0.73 -0.5 2,003,283 - +0.5 2,003,326 - -1.0 2,003,340 + +0.2 2,003,345 + +0.2 2,003,505 + SMc00162 0.22 +0.7 2,003,505 + SMc00162 0.22 -0.1 2,003,506 - SMc00162 0.22 +0.7 2,003,563 - SMc00162 0.29 +1.7 2,003,605 + SMc00162 0.34 +0.8 2,003,649 + SMc00162 0.39 +0.9 2,003,649 + SMc00162 0.39 -0.4 2,003,649 + SMc00162 0.39 +1.0 2,003,650 - SMc00162 0.39 +1.4 2,003,739 - SMc00162 0.50 +0.4 2,003,745 + SMc00162 0.51 -0.2 2,003,745 + SMc00162 0.51 -0.7 2,003,745 + SMc00162 0.51 -0.3 2,003,746 - SMc00162 0.51 +1.7 2,003,746 - SMc00162 0.51 -1.3 2,003,746 - SMc00162 0.51 +0.1 2,003,746 - SMc00162 0.51 -0.0 2,003,746 - SMc00162 0.51 +0.2 2,003,778 + SMc00162 0.55 +0.1 2,003,778 + SMc00162 0.55 -1.1 2,003,817 + SMc00162 0.60 +1.1 2,003,874 + SMc00162 0.66 -1.0 2,003,874 + SMc00162 0.66 -0.4 2,003,875 - SMc00162 0.67 -0.9
Or see this region's nucleotide sequence