Strain Fitness in Sinorhizobium meliloti 1021 around SMc00162

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00163 and SMc00162 are separated by 10 nucleotidesSMc00162 and SMc00161 are separated by 2 nucleotides SMc00163: SMc00163 - transcriptional regulator, at 2,002,291 to 2,003,313 SMc00163 SMc00162: SMc00162 - hypothetical protein, at 2,003,324 to 2,004,151 SMc00162 SMc00161: SMc00161 - NAD synthetase, at 2,004,154 to 2,005,836 SMc00161 Position (kb) 2003 2004 2005Strain fitness (log2 ratio) -1 0 1at 2002.342 kb on - strandat 2002.455 kb on - strand, within SMc00163at 2002.468 kb on + strand, within SMc00163at 2002.469 kb on - strand, within SMc00163at 2002.558 kb on - strand, within SMc00163at 2002.655 kb on + strand, within SMc00163at 2002.655 kb on + strand, within SMc00163at 2002.656 kb on - strand, within SMc00163at 2002.656 kb on - strand, within SMc00163at 2002.771 kb on + strand, within SMc00163at 2002.772 kb on - strand, within SMc00163at 2002.813 kb on + strand, within SMc00163at 2002.942 kb on - strand, within SMc00163at 2003.041 kb on + strand, within SMc00163at 2003.283 kb on - strandat 2003.326 kb on - strandat 2003.340 kb on + strandat 2003.345 kb on + strandat 2003.505 kb on + strand, within SMc00162at 2003.505 kb on + strand, within SMc00162at 2003.506 kb on - strand, within SMc00162at 2003.563 kb on - strand, within SMc00162at 2003.605 kb on + strand, within SMc00162at 2003.649 kb on + strand, within SMc00162at 2003.649 kb on + strand, within SMc00162at 2003.649 kb on + strand, within SMc00162at 2003.650 kb on - strand, within SMc00162at 2003.739 kb on - strand, within SMc00162at 2003.745 kb on + strand, within SMc00162at 2003.745 kb on + strand, within SMc00162at 2003.745 kb on + strand, within SMc00162at 2003.746 kb on - strand, within SMc00162at 2003.746 kb on - strand, within SMc00162at 2003.746 kb on - strand, within SMc00162at 2003.746 kb on - strand, within SMc00162at 2003.746 kb on - strand, within SMc00162at 2003.778 kb on + strand, within SMc00162at 2003.778 kb on + strand, within SMc00162at 2003.817 kb on + strand, within SMc00162at 2003.874 kb on + strand, within SMc00162at 2003.874 kb on + strand, within SMc00162at 2003.875 kb on - strand, within SMc00162

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,002,342 - -0.7
2,002,455 - SMc00163 0.16 -0.1
2,002,468 + SMc00163 0.17 -0.9
2,002,469 - SMc00163 0.17 +0.3
2,002,558 - SMc00163 0.26 +0.4
2,002,655 + SMc00163 0.36 -1.7
2,002,655 + SMc00163 0.36 -1.5
2,002,656 - SMc00163 0.36 -0.1
2,002,656 - SMc00163 0.36 +0.5
2,002,771 + SMc00163 0.47 -0.1
2,002,772 - SMc00163 0.47 -0.7
2,002,813 + SMc00163 0.51 -0.6
2,002,942 - SMc00163 0.64 -0.5
2,003,041 + SMc00163 0.73 -0.5
2,003,283 - +0.5
2,003,326 - -1.0
2,003,340 + +0.2
2,003,345 + +0.2
2,003,505 + SMc00162 0.22 +0.7
2,003,505 + SMc00162 0.22 -0.1
2,003,506 - SMc00162 0.22 +0.7
2,003,563 - SMc00162 0.29 +1.7
2,003,605 + SMc00162 0.34 +0.8
2,003,649 + SMc00162 0.39 +0.9
2,003,649 + SMc00162 0.39 -0.4
2,003,649 + SMc00162 0.39 +1.0
2,003,650 - SMc00162 0.39 +1.4
2,003,739 - SMc00162 0.50 +0.4
2,003,745 + SMc00162 0.51 -0.2
2,003,745 + SMc00162 0.51 -0.7
2,003,745 + SMc00162 0.51 -0.3
2,003,746 - SMc00162 0.51 +1.7
2,003,746 - SMc00162 0.51 -1.3
2,003,746 - SMc00162 0.51 +0.1
2,003,746 - SMc00162 0.51 -0.0
2,003,746 - SMc00162 0.51 +0.2
2,003,778 + SMc00162 0.55 +0.1
2,003,778 + SMc00162 0.55 -1.1
2,003,817 + SMc00162 0.60 +1.1
2,003,874 + SMc00162 0.66 -1.0
2,003,874 + SMc00162 0.66 -0.4
2,003,875 - SMc00162 0.67 -0.9

Or see this region's nucleotide sequence