Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1715 and SMa1717 are separated by 72 nucleotides SMa1717 and SMa1718 are separated by 47 nucleotides
SMa1715: SMa1715 - AdeC3 adenine deaminase, at 965,405 to 967,192
SMa1715
SMa1717: SMa1717 - Permease, at 967,265 to 968,665
SMa1717
SMa1718: SMa1718 - AdeC4 adenine deaminase, at 968,713 to 970,515
SMa1718
Position (kb) 967
968
969 Strain fitness (log2 ratio) -1
0
1
2
3 at 966.389 kb on - strand, within SMa1715 at 966.522 kb on + strand, within SMa1715 at 966.523 kb on - strand, within SMa1715 at 966.558 kb on + strand, within SMa1715 at 966.558 kb on + strand, within SMa1715 at 966.559 kb on - strand, within SMa1715 at 966.559 kb on - strand, within SMa1715 at 967.144 kb on + strand at 967.154 kb on + strand at 967.360 kb on + strand at 967.361 kb on - strand at 967.581 kb on - strand, within SMa1717 at 967.594 kb on + strand, within SMa1717 at 967.650 kb on + strand, within SMa1717 at 967.650 kb on + strand, within SMa1717 at 967.650 kb on + strand, within SMa1717 at 967.839 kb on + strand, within SMa1717 at 968.036 kb on + strand, within SMa1717 at 968.036 kb on + strand, within SMa1717 at 968.048 kb on + strand, within SMa1717 at 968.125 kb on + strand, within SMa1717 at 968.126 kb on - strand, within SMa1717 at 968.256 kb on - strand, within SMa1717 at 968.256 kb on - strand, within SMa1717 at 968.266 kb on + strand, within SMa1717 at 968.267 kb on - strand, within SMa1717 at 968.344 kb on - strand, within SMa1717 at 968.511 kb on + strand, within SMa1717 at 968.512 kb on - strand, within SMa1717 at 968.512 kb on - strand, within SMa1717 at 968.512 kb on - strand, within SMa1717 at 968.512 kb on - strand, within SMa1717 at 968.588 kb on + strand at 968.589 kb on - strand at 968.659 kb on - strand at 968.665 kb on + strand at 968.665 kb on + strand at 968.665 kb on + strand at 968.666 kb on - strand at 968.666 kb on - strand at 968.666 kb on - strand at 968.666 kb on - strand at 968.666 kb on - strand at 968.714 kb on + strand at 968.816 kb on + strand at 968.853 kb on - strand at 968.853 kb on - strand at 968.994 kb on + strand, within SMa1718 at 968.994 kb on + strand, within SMa1718 at 969.040 kb on - strand, within SMa1718 at 969.197 kb on + strand, within SMa1718 at 969.198 kb on - strand, within SMa1718 at 969.198 kb on - strand, within SMa1718 at 969.369 kb on + strand, within SMa1718 at 969.424 kb on + strand, within SMa1718 at 969.425 kb on - strand, within SMa1718 at 969.429 kb on + strand, within SMa1718
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 966,389 - SMa1715 0.55 +0.4 966,522 + SMa1715 0.62 -0.2 966,523 - SMa1715 0.63 +0.1 966,558 + SMa1715 0.64 -0.2 966,558 + SMa1715 0.64 +1.0 966,559 - SMa1715 0.65 -0.1 966,559 - SMa1715 0.65 +0.1 967,144 + -0.6 967,154 + -1.5 967,360 + -1.5 967,361 - -0.6 967,581 - SMa1717 0.23 +0.5 967,594 + SMa1717 0.23 +0.8 967,650 + SMa1717 0.27 -0.1 967,650 + SMa1717 0.27 -0.1 967,650 + SMa1717 0.27 +1.5 967,839 + SMa1717 0.41 +3.3 968,036 + SMa1717 0.55 -0.3 968,036 + SMa1717 0.55 +0.1 968,048 + SMa1717 0.56 -1.0 968,125 + SMa1717 0.61 -0.1 968,126 - SMa1717 0.61 +0.2 968,256 - SMa1717 0.71 +0.7 968,256 - SMa1717 0.71 -0.2 968,266 + SMa1717 0.71 -0.3 968,267 - SMa1717 0.72 +0.2 968,344 - SMa1717 0.77 +1.2 968,511 + SMa1717 0.89 -1.0 968,512 - SMa1717 0.89 +0.2 968,512 - SMa1717 0.89 +0.4 968,512 - SMa1717 0.89 +0.6 968,512 - SMa1717 0.89 -0.1 968,588 + -0.6 968,589 - -0.1 968,659 - +0.3 968,665 + +0.5 968,665 + +2.1 968,665 + +0.2 968,666 - -0.2 968,666 - +1.0 968,666 - -0.6 968,666 - -0.7 968,666 - +0.1 968,714 + +0.2 968,816 + +1.1 968,853 - -0.1 968,853 - -0.8 968,994 + SMa1718 0.16 -1.2 968,994 + SMa1718 0.16 +0.1 969,040 - SMa1718 0.18 -0.3 969,197 + SMa1718 0.27 -0.4 969,198 - SMa1718 0.27 +0.8 969,198 - SMa1718 0.27 -0.1 969,369 + SMa1718 0.36 +0.4 969,424 + SMa1718 0.39 +1.4 969,425 - SMa1718 0.39 -0.6 969,429 + SMa1718 0.40 -0.9
Or see this region's nucleotide sequence