Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1654 and SMa1657 are separated by 408 nucleotides SMa1657 and SMa1658 are separated by 4 nucleotides SMa1658 and SMa1660 are separated by 245 nucleotides
SMa1654: SMa1654 - GntR family transcriptional regulator, at 924,741 to 925,439
SMa1654
SMa1657: SMa1657 - hypothetical protein, at 925,848 to 926,255
SMa1657
SMa1658: SMa1658 - hypothetical protein, at 926,260 to 926,625
SMa1658
SMa1660: SMa1660 - hypothetical protein, at 926,871 to 927,455
SMa1660
Position (kb)
925
926
927 Strain fitness (log2 ratio)
-2
-1
0
1 at 924.873 kb on + strand, within SMa1654 at 925.013 kb on - strand, within SMa1654 at 925.162 kb on + strand, within SMa1654 at 925.162 kb on + strand, within SMa1654 at 925.188 kb on - strand, within SMa1654 at 925.188 kb on - strand, within SMa1654 at 925.498 kb on + strand at 925.691 kb on + strand at 925.691 kb on + strand at 925.707 kb on + strand at 925.708 kb on - strand at 925.711 kb on + strand at 925.813 kb on - strand at 925.813 kb on - strand at 925.959 kb on + strand, within SMa1657 at 926.004 kb on - strand, within SMa1657 at 926.009 kb on + strand, within SMa1657 at 926.010 kb on - strand, within SMa1657 at 926.010 kb on - strand, within SMa1657 at 926.010 kb on - strand, within SMa1657 at 926.037 kb on + strand, within SMa1657 at 926.053 kb on + strand, within SMa1657 at 926.136 kb on - strand, within SMa1657 at 926.136 kb on - strand, within SMa1657 at 926.234 kb on - strand at 926.262 kb on - strand at 926.269 kb on + strand at 926.544 kb on + strand, within SMa1658 at 926.569 kb on + strand, within SMa1658 at 926.585 kb on - strand, within SMa1658 at 926.614 kb on + strand at 926.735 kb on + strand at 926.752 kb on + strand at 926.752 kb on + strand at 926.752 kb on + strand at 926.752 kb on + strand at 926.753 kb on - strand at 926.764 kb on + strand at 926.765 kb on - strand at 926.765 kb on - strand at 926.765 kb on - strand at 926.852 kb on + strand at 926.886 kb on + strand at 927.098 kb on - strand, within SMa1660 at 927.098 kb on - strand, within SMa1660 at 927.121 kb on + strand, within SMa1660 at 927.253 kb on + strand, within SMa1660
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 924,873 + SMa1654 0.19 +0.0 925,013 - SMa1654 0.39 -0.1 925,162 + SMa1654 0.60 -0.7 925,162 + SMa1654 0.60 +0.5 925,188 - SMa1654 0.64 +1.2 925,188 - SMa1654 0.64 +0.4 925,498 + +0.3 925,691 + +0.3 925,691 + -0.1 925,707 + +0.8 925,708 - +1.0 925,711 + +0.2 925,813 - -0.6 925,813 - -1.6 925,959 + SMa1657 0.27 -1.6 926,004 - SMa1657 0.38 -0.5 926,009 + SMa1657 0.39 -0.9 926,010 - SMa1657 0.40 -0.3 926,010 - SMa1657 0.40 -1.0 926,010 - SMa1657 0.40 +0.3 926,037 + SMa1657 0.46 -0.5 926,053 + SMa1657 0.50 -0.6 926,136 - SMa1657 0.71 +0.1 926,136 - SMa1657 0.71 -0.3 926,234 - +0.6 926,262 - -0.3 926,269 + -0.1 926,544 + SMa1658 0.78 -1.9 926,569 + SMa1658 0.84 +0.2 926,585 - SMa1658 0.89 -0.1 926,614 + -0.0 926,735 + +0.0 926,752 + -0.5 926,752 + -0.8 926,752 + -0.3 926,752 + -0.2 926,753 - -0.9 926,764 + -1.1 926,765 - -1.3 926,765 - +0.5 926,765 - -0.4 926,852 + -0.3 926,886 + -1.3 927,098 - SMa1660 0.39 -0.7 927,098 - SMa1660 0.39 -0.8 927,121 + SMa1660 0.43 +1.4 927,253 + SMa1660 0.65 +0.4
Or see this region's nucleotide sequence