Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1347 and SMa1349 are separated by 25 nucleotides SMa1349 and SMa1351 are separated by 2 nucleotides SMa1351 and SMa1353 are separated by 9 nucleotides
SMa1347: SMa1347 - dehydrogenase, at 737,144 to 738,118
SMa1347
SMa1349: SMa1349 - GntR family transcriptional regulator, at 738,144 to 738,836
SMa1349
SMa1351: SMa1351 - enolase, at 738,839 to 740,047
SMa1351
SMa1353: SMa1353 - epimerase, at 740,057 to 740,944
SMa1353
Position (kb) 738
739
740
741 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 737.925 kb on - strand, within SMa1347 at 737.943 kb on - strand, within SMa1347 at 738.071 kb on - strand at 738.071 kb on - strand at 738.146 kb on - strand at 738.263 kb on - strand, within SMa1349 at 738.266 kb on + strand, within SMa1349 at 738.266 kb on + strand, within SMa1349 at 738.272 kb on + strand, within SMa1349 at 738.273 kb on - strand, within SMa1349 at 738.273 kb on - strand, within SMa1349 at 738.273 kb on - strand, within SMa1349 at 738.316 kb on + strand, within SMa1349 at 738.316 kb on + strand, within SMa1349 at 738.321 kb on - strand, within SMa1349 at 738.346 kb on + strand, within SMa1349 at 738.347 kb on - strand, within SMa1349 at 738.347 kb on - strand, within SMa1349 at 738.349 kb on + strand, within SMa1349 at 738.451 kb on + strand, within SMa1349 at 738.491 kb on - strand, within SMa1349 at 738.491 kb on - strand, within SMa1349 at 738.491 kb on - strand, within SMa1349 at 738.569 kb on - strand, within SMa1349 at 738.650 kb on - strand, within SMa1349 at 738.650 kb on - strand, within SMa1349 at 738.654 kb on - strand, within SMa1349 at 738.795 kb on + strand at 738.795 kb on + strand at 738.796 kb on - strand at 738.837 kb on - strand at 738.840 kb on + strand at 738.879 kb on - strand at 738.914 kb on + strand at 738.915 kb on - strand at 739.121 kb on - strand, within SMa1351 at 739.267 kb on + strand, within SMa1351 at 739.267 kb on + strand, within SMa1351 at 739.268 kb on - strand, within SMa1351 at 739.379 kb on - strand, within SMa1351 at 739.434 kb on + strand, within SMa1351 at 739.434 kb on + strand, within SMa1351 at 739.498 kb on - strand, within SMa1351 at 739.551 kb on + strand, within SMa1351 at 739.551 kb on + strand, within SMa1351 at 739.551 kb on + strand, within SMa1351 at 739.551 kb on + strand, within SMa1351 at 739.573 kb on + strand, within SMa1351 at 739.574 kb on - strand, within SMa1351 at 739.654 kb on + strand, within SMa1351 at 739.693 kb on + strand, within SMa1351 at 739.737 kb on + strand, within SMa1351 at 739.738 kb on - strand, within SMa1351 at 739.762 kb on + strand, within SMa1351 at 739.803 kb on + strand, within SMa1351 at 739.831 kb on - strand, within SMa1351 at 739.967 kb on - strand at 739.967 kb on - strand at 740.173 kb on + strand, within SMa1353 at 740.198 kb on - strand, within SMa1353 at 740.391 kb on + strand, within SMa1353 at 740.391 kb on + strand, within SMa1353 at 740.391 kb on + strand, within SMa1353 at 740.391 kb on + strand, within SMa1353 at 740.391 kb on + strand, within SMa1353 at 740.391 kb on + strand, within SMa1353 at 740.392 kb on - strand, within SMa1353 at 740.392 kb on - strand, within SMa1353 at 740.392 kb on - strand, within SMa1353 at 740.392 kb on - strand, within SMa1353 at 740.392 kb on - strand, within SMa1353 at 740.392 kb on - strand, within SMa1353 at 740.392 kb on - strand, within SMa1353 at 740.392 kb on - strand, within SMa1353 at 740.499 kb on + strand, within SMa1353 at 740.645 kb on + strand, within SMa1353 at 740.646 kb on - strand, within SMa1353 at 740.687 kb on + strand, within SMa1353 at 740.688 kb on - strand, within SMa1353 at 740.688 kb on - strand, within SMa1353 at 740.689 kb on + strand, within SMa1353 at 740.690 kb on - strand, within SMa1353 at 740.703 kb on + strand, within SMa1353 at 740.704 kb on - strand, within SMa1353 at 740.704 kb on - strand, within SMa1353 at 740.874 kb on + strand at 740.945 kb on - strand at 740.967 kb on - strand at 740.967 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 737,925 - SMa1347 0.80 +0.2 737,943 - SMa1347 0.82 +0.4 738,071 - +1.5 738,071 - +0.8 738,146 - -0.2 738,263 - SMa1349 0.17 -0.4 738,266 + SMa1349 0.18 -0.3 738,266 + SMa1349 0.18 -0.2 738,272 + SMa1349 0.18 +0.3 738,273 - SMa1349 0.19 +0.5 738,273 - SMa1349 0.19 -0.5 738,273 - SMa1349 0.19 +0.3 738,316 + SMa1349 0.25 +0.1 738,316 + SMa1349 0.25 +0.2 738,321 - SMa1349 0.26 +0.9 738,346 + SMa1349 0.29 -0.5 738,347 - SMa1349 0.29 -0.1 738,347 - SMa1349 0.29 -0.9 738,349 + SMa1349 0.30 +0.4 738,451 + SMa1349 0.44 -0.1 738,491 - SMa1349 0.50 +0.3 738,491 - SMa1349 0.50 +0.0 738,491 - SMa1349 0.50 -0.5 738,569 - SMa1349 0.61 +3.0 738,650 - SMa1349 0.73 -1.0 738,650 - SMa1349 0.73 -0.7 738,654 - SMa1349 0.74 +0.3 738,795 + +0.1 738,795 + +0.1 738,796 - -0.4 738,837 - +0.0 738,840 + +0.6 738,879 - -0.0 738,914 + -0.5 738,915 - +1.1 739,121 - SMa1351 0.23 +0.5 739,267 + SMa1351 0.35 -0.3 739,267 + SMa1351 0.35 -0.7 739,268 - SMa1351 0.35 -0.1 739,379 - SMa1351 0.45 +1.3 739,434 + SMa1351 0.49 -0.6 739,434 + SMa1351 0.49 +0.6 739,498 - SMa1351 0.55 +1.5 739,551 + SMa1351 0.59 +1.0 739,551 + SMa1351 0.59 +0.2 739,551 + SMa1351 0.59 -0.0 739,551 + SMa1351 0.59 +0.2 739,573 + SMa1351 0.61 +0.0 739,574 - SMa1351 0.61 -0.1 739,654 + SMa1351 0.67 +1.6 739,693 + SMa1351 0.71 -2.5 739,737 + SMa1351 0.74 +0.9 739,738 - SMa1351 0.74 -0.1 739,762 + SMa1351 0.76 +1.1 739,803 + SMa1351 0.80 +0.4 739,831 - SMa1351 0.82 +0.4 739,967 - +0.9 739,967 - -0.6 740,173 + SMa1353 0.13 -0.4 740,198 - SMa1353 0.16 -1.3 740,391 + SMa1353 0.38 -0.3 740,391 + SMa1353 0.38 +1.1 740,391 + SMa1353 0.38 +3.9 740,391 + SMa1353 0.38 +2.3 740,391 + SMa1353 0.38 -0.3 740,391 + SMa1353 0.38 -1.5 740,392 - SMa1353 0.38 +0.4 740,392 - SMa1353 0.38 +0.1 740,392 - SMa1353 0.38 +0.2 740,392 - SMa1353 0.38 +0.2 740,392 - SMa1353 0.38 -0.2 740,392 - SMa1353 0.38 +1.2 740,392 - SMa1353 0.38 -0.8 740,392 - SMa1353 0.38 +0.7 740,499 + SMa1353 0.50 -0.4 740,645 + SMa1353 0.66 -1.5 740,646 - SMa1353 0.66 -0.4 740,687 + SMa1353 0.71 -0.6 740,688 - SMa1353 0.71 -0.1 740,688 - SMa1353 0.71 -0.6 740,689 + SMa1353 0.71 +1.5 740,690 - SMa1353 0.71 -0.3 740,703 + SMa1353 0.73 -0.7 740,704 - SMa1353 0.73 +1.0 740,704 - SMa1353 0.73 +0.2 740,874 + +0.1 740,945 - -0.0 740,967 - -0.2 740,967 - -0.1
Or see this region's nucleotide sequence