Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1341 and SMa1344 are separated by 196 nucleotides SMa1344 and SMa1345 overlap by 1 nucleotides
SMa1341: SMa1341 - ABC transporter permease, at 733,694 to 734,653
SMa1341
SMa1344: SMa1344 - ABC transporter ATP-binding protein, at 734,850 to 735,959
SMa1344
SMa1345: SMa1345 - ABC transporter ATP-binding protein, at 735,959 to 737,035
SMa1345
Position (kb) 734
735
736 Strain fitness (log2 ratio) -2
-1
0
1
2 at 733.931 kb on + strand, within SMa1341 at 734.065 kb on + strand, within SMa1341 at 734.102 kb on + strand, within SMa1341 at 734.157 kb on + strand, within SMa1341 at 734.197 kb on + strand, within SMa1341 at 734.198 kb on - strand, within SMa1341 at 734.198 kb on - strand, within SMa1341 at 734.248 kb on + strand, within SMa1341 at 734.248 kb on + strand, within SMa1341 at 734.248 kb on + strand, within SMa1341 at 734.249 kb on - strand, within SMa1341 at 734.250 kb on + strand, within SMa1341 at 734.259 kb on - strand, within SMa1341 at 734.259 kb on - strand, within SMa1341 at 734.274 kb on + strand, within SMa1341 at 734.275 kb on - strand, within SMa1341 at 734.275 kb on - strand, within SMa1341 at 734.327 kb on + strand, within SMa1341 at 734.328 kb on - strand, within SMa1341 at 734.328 kb on - strand, within SMa1341 at 734.437 kb on + strand, within SMa1341 at 734.438 kb on - strand, within SMa1341 at 734.677 kb on + strand at 734.678 kb on - strand at 734.708 kb on + strand at 734.708 kb on + strand at 734.708 kb on + strand at 734.758 kb on + strand at 734.759 kb on - strand at 734.777 kb on + strand at 734.778 kb on - strand at 734.778 kb on - strand at 734.866 kb on + strand at 734.867 kb on - strand at 734.987 kb on - strand, within SMa1344 at 735.035 kb on - strand, within SMa1344 at 735.058 kb on + strand, within SMa1344 at 735.058 kb on + strand, within SMa1344 at 735.058 kb on + strand, within SMa1344 at 735.088 kb on + strand, within SMa1344 at 735.088 kb on + strand, within SMa1344 at 735.134 kb on + strand, within SMa1344 at 735.414 kb on + strand, within SMa1344 at 735.414 kb on + strand, within SMa1344 at 735.414 kb on + strand, within SMa1344 at 735.414 kb on + strand, within SMa1344 at 735.415 kb on - strand, within SMa1344 at 735.415 kb on - strand, within SMa1344 at 735.415 kb on - strand, within SMa1344 at 735.419 kb on - strand, within SMa1344 at 735.419 kb on - strand, within SMa1344 at 735.419 kb on - strand, within SMa1344 at 735.712 kb on + strand, within SMa1344 at 735.713 kb on - strand, within SMa1344 at 735.777 kb on - strand, within SMa1344 at 735.809 kb on - strand, within SMa1344 at 735.895 kb on + strand at 735.896 kb on - strand at 735.896 kb on - strand at 735.896 kb on - strand at 736.208 kb on + strand, within SMa1345 at 736.227 kb on - strand, within SMa1345 at 736.228 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.628 kb on + strand, within SMa1345 at 736.629 kb on - strand, within SMa1345 at 736.629 kb on - strand, within SMa1345 at 736.629 kb on - strand, within SMa1345 at 736.848 kb on + strand, within SMa1345 at 736.849 kb on - strand, within SMa1345 at 736.894 kb on + strand, within SMa1345 at 736.900 kb on + strand, within SMa1345 at 736.900 kb on + strand, within SMa1345 at 736.901 kb on - strand, within SMa1345
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 733,931 + SMa1341 0.25 +0.3 734,065 + SMa1341 0.39 +0.4 734,102 + SMa1341 0.42 -2.3 734,157 + SMa1341 0.48 -0.8 734,197 + SMa1341 0.52 -0.7 734,198 - SMa1341 0.53 +0.2 734,198 - SMa1341 0.53 +0.2 734,248 + SMa1341 0.58 +1.5 734,248 + SMa1341 0.58 +0.2 734,248 + SMa1341 0.58 +0.4 734,249 - SMa1341 0.58 +1.3 734,250 + SMa1341 0.58 -0.6 734,259 - SMa1341 0.59 -0.0 734,259 - SMa1341 0.59 -1.7 734,274 + SMa1341 0.60 -0.9 734,275 - SMa1341 0.61 -0.5 734,275 - SMa1341 0.61 -0.0 734,327 + SMa1341 0.66 -0.4 734,328 - SMa1341 0.66 +2.3 734,328 - SMa1341 0.66 -0.2 734,437 + SMa1341 0.77 +0.6 734,438 - SMa1341 0.78 +0.4 734,677 + -0.1 734,678 - +0.7 734,708 + +0.0 734,708 + +1.7 734,708 + +0.8 734,758 + +0.8 734,759 - +1.0 734,777 + +0.0 734,778 - -0.0 734,778 - -0.3 734,866 + -0.0 734,867 - +0.0 734,987 - SMa1344 0.12 -1.3 735,035 - SMa1344 0.17 +0.4 735,058 + SMa1344 0.19 +1.0 735,058 + SMa1344 0.19 +0.4 735,058 + SMa1344 0.19 -2.5 735,088 + SMa1344 0.21 -0.5 735,088 + SMa1344 0.21 +1.1 735,134 + SMa1344 0.26 -0.0 735,414 + SMa1344 0.51 +0.4 735,414 + SMa1344 0.51 +0.3 735,414 + SMa1344 0.51 -0.1 735,414 + SMa1344 0.51 +1.7 735,415 - SMa1344 0.51 +0.7 735,415 - SMa1344 0.51 +0.8 735,415 - SMa1344 0.51 +0.3 735,419 - SMa1344 0.51 +0.3 735,419 - SMa1344 0.51 -0.3 735,419 - SMa1344 0.51 +1.1 735,712 + SMa1344 0.78 -0.3 735,713 - SMa1344 0.78 -2.5 735,777 - SMa1344 0.84 +0.3 735,809 - SMa1344 0.86 -0.5 735,895 + +0.9 735,896 - +0.7 735,896 - +0.5 735,896 - +0.3 736,208 + SMa1345 0.23 -0.0 736,227 - SMa1345 0.25 +0.7 736,228 + SMa1345 0.25 +0.2 736,628 + SMa1345 0.62 +0.2 736,628 + SMa1345 0.62 -0.2 736,628 + SMa1345 0.62 -0.0 736,628 + SMa1345 0.62 +0.1 736,628 + SMa1345 0.62 +0.1 736,629 - SMa1345 0.62 -0.0 736,629 - SMa1345 0.62 -2.0 736,629 - SMa1345 0.62 -0.8 736,848 + SMa1345 0.83 +1.0 736,849 - SMa1345 0.83 -0.1 736,894 + SMa1345 0.87 +1.2 736,900 + SMa1345 0.87 +0.2 736,900 + SMa1345 0.87 -0.8 736,901 - SMa1345 0.87 +0.1
Or see this region's nucleotide sequence