Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1306 and SMa1308 overlap by 1 nucleotides SMa1308 and SMa1310 are separated by 4 nucleotides SMa1310 and SMa1311 overlap by 4 nucleotides
SMa1306: SMa1306 - VirB9 type IV secretion protein, at 713,420 to 714,274
SMa1306
SMa1308: SMa1308 - VirB8 type IV secretion protein, at 714,274 to 714,945
SMa1308
SMa1310: SMa1310 - VirB7-like protein, at 714,950 to 715,264
SMa1310
SMa1311: SMa1311 - VirB6 type IV secretion protein, at 715,261 to 716,202
SMa1311
Position (kb) 714
715
716 Strain fitness (log2 ratio) -1
0
1
2 at 713.987 kb on - strand, within SMa1306 at 714.153 kb on + strand, within SMa1306 at 714.154 kb on - strand, within SMa1306 at 714.162 kb on + strand, within SMa1306 at 714.162 kb on + strand, within SMa1306 at 714.163 kb on - strand, within SMa1306 at 714.163 kb on - strand, within SMa1306 at 714.266 kb on - strand at 714.368 kb on + strand, within SMa1308 at 714.437 kb on + strand, within SMa1308 at 714.516 kb on + strand, within SMa1308 at 714.516 kb on + strand, within SMa1308 at 714.633 kb on - strand, within SMa1308 at 714.633 kb on - strand, within SMa1308 at 714.653 kb on + strand, within SMa1308 at 714.653 kb on + strand, within SMa1308 at 714.832 kb on + strand, within SMa1308 at 714.917 kb on + strand at 714.917 kb on + strand at 714.917 kb on + strand at 714.918 kb on - strand at 714.970 kb on - strand at 715.091 kb on - strand, within SMa1310 at 715.223 kb on - strand, within SMa1310 at 715.223 kb on - strand, within SMa1310 at 715.392 kb on - strand, within SMa1311 at 715.392 kb on - strand, within SMa1311 at 715.445 kb on + strand, within SMa1311 at 715.445 kb on + strand, within SMa1311 at 715.446 kb on - strand, within SMa1311 at 715.446 kb on - strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.454 kb on + strand, within SMa1311 at 715.455 kb on - strand, within SMa1311 at 715.455 kb on - strand, within SMa1311 at 715.455 kb on - strand, within SMa1311 at 715.509 kb on + strand, within SMa1311 at 715.509 kb on + strand, within SMa1311 at 715.509 kb on + strand, within SMa1311 at 715.510 kb on - strand, within SMa1311 at 715.510 kb on - strand, within SMa1311 at 715.556 kb on - strand, within SMa1311 at 715.722 kb on + strand, within SMa1311 at 715.722 kb on + strand, within SMa1311 at 715.725 kb on - strand, within SMa1311 at 715.943 kb on + strand, within SMa1311 at 715.943 kb on + strand, within SMa1311 at 715.943 kb on + strand, within SMa1311 at 715.944 kb on - strand, within SMa1311 at 715.944 kb on - strand, within SMa1311 at 716.061 kb on - strand, within SMa1311 at 716.061 kb on - strand, within SMa1311 at 716.072 kb on + strand, within SMa1311 at 716.192 kb on + strand at 716.192 kb on + strand at 716.192 kb on + strand at 716.192 kb on + strand at 716.193 kb on - strand at 716.193 kb on - strand at 716.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 713,987 - SMa1306 0.66 -0.0 714,153 + SMa1306 0.86 +1.4 714,154 - SMa1306 0.86 +0.8 714,162 + SMa1306 0.87 +0.3 714,162 + SMa1306 0.87 +0.2 714,163 - SMa1306 0.87 +1.0 714,163 - SMa1306 0.87 -0.0 714,266 - -0.0 714,368 + SMa1308 0.14 -1.1 714,437 + SMa1308 0.24 -0.0 714,516 + SMa1308 0.36 -0.5 714,516 + SMa1308 0.36 -0.0 714,633 - SMa1308 0.53 +0.3 714,633 - SMa1308 0.53 -0.3 714,653 + SMa1308 0.56 -0.8 714,653 + SMa1308 0.56 -0.4 714,832 + SMa1308 0.83 +0.9 714,917 + -1.0 714,917 + +0.9 714,917 + -0.1 714,918 - -0.6 714,970 - -0.6 715,091 - SMa1310 0.45 +2.4 715,223 - SMa1310 0.87 -1.7 715,223 - SMa1310 0.87 +0.1 715,392 - SMa1311 0.14 -0.4 715,392 - SMa1311 0.14 -0.2 715,445 + SMa1311 0.20 +0.2 715,445 + SMa1311 0.20 -0.6 715,446 - SMa1311 0.20 +1.3 715,446 - SMa1311 0.20 -0.0 715,454 + SMa1311 0.20 +0.9 715,454 + SMa1311 0.20 -1.2 715,454 + SMa1311 0.20 -0.5 715,454 + SMa1311 0.20 +0.3 715,454 + SMa1311 0.20 +0.6 715,455 - SMa1311 0.21 +1.0 715,455 - SMa1311 0.21 -1.0 715,455 - SMa1311 0.21 +0.1 715,509 + SMa1311 0.26 +0.6 715,509 + SMa1311 0.26 -0.3 715,509 + SMa1311 0.26 -0.2 715,510 - SMa1311 0.26 -0.1 715,510 - SMa1311 0.26 +0.7 715,556 - SMa1311 0.31 -0.4 715,722 + SMa1311 0.49 -0.5 715,722 + SMa1311 0.49 +0.3 715,725 - SMa1311 0.49 -0.6 715,943 + SMa1311 0.72 +0.0 715,943 + SMa1311 0.72 -1.6 715,943 + SMa1311 0.72 -0.7 715,944 - SMa1311 0.73 -0.1 715,944 - SMa1311 0.73 -1.5 716,061 - SMa1311 0.85 -0.1 716,061 - SMa1311 0.85 +0.0 716,072 + SMa1311 0.86 +0.5 716,192 + -0.0 716,192 + +0.4 716,192 + +1.0 716,192 + -0.4 716,193 - +0.7 716,193 - -0.5 716,193 - +0.7
Or see this region's nucleotide sequence