Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1183 and SMa1184 overlap by 4 nucleotides SMa1184 and SMa1185 overlap by 4 nucleotides SMa1185 and SMa1186 overlap by 4 nucleotides
SMa1183: SMa1183 - NosD nitrous oxidase accessory protein, at 649,888 to 651,249
SMa1183
SMa1184: SMa1184 - NosF ATPase, at 651,246 to 652,160
SMa1184
SMa1185: SMa1185 - NosY permease, at 652,157 to 652,984
SMa1185
SMa1186: SMa1186 - NosL copper chaperone, at 652,981 to 653,538
SMa1186
Position (kb) 651
652
653 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 650.297 kb on - strand, within SMa1183 at 650.297 kb on - strand, within SMa1183 at 650.328 kb on - strand, within SMa1183 at 650.384 kb on + strand, within SMa1183 at 650.434 kb on + strand, within SMa1183 at 650.448 kb on + strand, within SMa1183 at 650.450 kb on + strand, within SMa1183 at 650.450 kb on + strand, within SMa1183 at 650.451 kb on - strand, within SMa1183 at 650.522 kb on - strand, within SMa1183 at 650.522 kb on - strand, within SMa1183 at 650.528 kb on - strand, within SMa1183 at 650.528 kb on - strand, within SMa1183 at 650.582 kb on - strand, within SMa1183 at 650.663 kb on - strand, within SMa1183 at 650.663 kb on - strand, within SMa1183 at 650.822 kb on + strand, within SMa1183 at 650.823 kb on - strand, within SMa1183 at 650.830 kb on + strand, within SMa1183 at 650.962 kb on + strand, within SMa1183 at 650.962 kb on + strand, within SMa1183 at 650.962 kb on + strand, within SMa1183 at 650.963 kb on - strand, within SMa1183 at 651.285 kb on + strand at 651.301 kb on + strand at 651.360 kb on - strand, within SMa1184 at 651.360 kb on - strand, within SMa1184 at 651.642 kb on + strand, within SMa1184 at 651.643 kb on - strand, within SMa1184 at 651.643 kb on - strand, within SMa1184 at 651.643 kb on - strand, within SMa1184 at 651.760 kb on - strand, within SMa1184 at 651.769 kb on + strand, within SMa1184 at 651.821 kb on + strand, within SMa1184 at 652.126 kb on - strand at 652.126 kb on - strand at 652.126 kb on - strand at 652.126 kb on - strand at 652.165 kb on + strand at 652.171 kb on + strand at 652.218 kb on + strand at 652.236 kb on + strand at 652.236 kb on + strand at 652.278 kb on + strand, within SMa1185 at 652.434 kb on - strand, within SMa1185 at 652.488 kb on + strand, within SMa1185 at 652.645 kb on - strand, within SMa1185 at 652.645 kb on - strand, within SMa1185 at 652.693 kb on + strand, within SMa1185 at 652.694 kb on - strand, within SMa1185 at 652.694 kb on - strand, within SMa1185 at 652.718 kb on + strand, within SMa1185 at 652.818 kb on - strand, within SMa1185 at 652.834 kb on - strand, within SMa1185 at 652.980 kb on + strand at 652.980 kb on + strand at 652.980 kb on + strand at 652.981 kb on - strand at 653.049 kb on + strand, within SMa1186 at 653.049 kb on + strand, within SMa1186 at 653.049 kb on + strand, within SMa1186 at 653.050 kb on - strand, within SMa1186 at 653.098 kb on + strand, within SMa1186
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 650,297 - SMa1183 0.30 -0.5 650,297 - SMa1183 0.30 -0.3 650,328 - SMa1183 0.32 -1.4 650,384 + SMa1183 0.36 +0.9 650,434 + SMa1183 0.40 -0.1 650,448 + SMa1183 0.41 +0.2 650,450 + SMa1183 0.41 -0.4 650,450 + SMa1183 0.41 +3.3 650,451 - SMa1183 0.41 -0.3 650,522 - SMa1183 0.47 -0.4 650,522 - SMa1183 0.47 +0.8 650,528 - SMa1183 0.47 -0.0 650,528 - SMa1183 0.47 -1.0 650,582 - SMa1183 0.51 -1.8 650,663 - SMa1183 0.57 -0.7 650,663 - SMa1183 0.57 -0.2 650,822 + SMa1183 0.69 +0.7 650,823 - SMa1183 0.69 +0.2 650,830 + SMa1183 0.69 +1.3 650,962 + SMa1183 0.79 +0.5 650,962 + SMa1183 0.79 -1.0 650,962 + SMa1183 0.79 +0.1 650,963 - SMa1183 0.79 -0.2 651,285 + +0.5 651,301 + +0.5 651,360 - SMa1184 0.12 -0.2 651,360 - SMa1184 0.12 +0.5 651,642 + SMa1184 0.43 +3.0 651,643 - SMa1184 0.43 +0.1 651,643 - SMa1184 0.43 -0.2 651,643 - SMa1184 0.43 +1.4 651,760 - SMa1184 0.56 +0.4 651,769 + SMa1184 0.57 +0.2 651,821 + SMa1184 0.63 -0.1 652,126 - -1.0 652,126 - -0.1 652,126 - -0.2 652,126 - -0.3 652,165 + +2.5 652,171 + -0.6 652,218 + +0.4 652,236 + +1.5 652,236 + +0.1 652,278 + SMa1185 0.15 +0.5 652,434 - SMa1185 0.33 +0.0 652,488 + SMa1185 0.40 -0.4 652,645 - SMa1185 0.59 -0.3 652,645 - SMa1185 0.59 -0.2 652,693 + SMa1185 0.65 +2.3 652,694 - SMa1185 0.65 -0.5 652,694 - SMa1185 0.65 -0.5 652,718 + SMa1185 0.68 -0.1 652,818 - SMa1185 0.80 +0.0 652,834 - SMa1185 0.82 +1.0 652,980 + -0.0 652,980 + +4.0 652,980 + +0.1 652,981 - -0.1 653,049 + SMa1186 0.12 +1.2 653,049 + SMa1186 0.12 -1.5 653,049 + SMa1186 0.12 +0.4 653,050 - SMa1186 0.12 +0.9 653,098 + SMa1186 0.21 +0.3
Or see this region's nucleotide sequence