Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0956 and SMa0958 overlap by 4 nucleotides SMa0958 and SMa0959 overlap by 4 nucleotides SMa0959 and SMa0961 are separated by 20 nucleotides
SMa0956: SMa0956 - AtrB glutamate-1-semialdehyde 2,1-aminomutase, at 534,818 to 536,179
SMa0956
SMa0958: SMa0958 - acetolactate synthase catalytic subunit, at 536,176 to 537,888
SMa0958
SMa0959: SMa0959 - 3-ketoacyl-ACP reductase, at 537,885 to 538,661
SMa0959
SMa0961: SMa0961 - Response regulator, at 538,682 to 539,404
SMa0961
Position (kb) 536
537
538 Strain fitness (log2 ratio) -2
-1
0
1
2 at 535.254 kb on + strand, within SMa0956 at 535.255 kb on - strand, within SMa0956 at 535.274 kb on + strand, within SMa0956 at 535.324 kb on + strand, within SMa0956 at 535.342 kb on + strand, within SMa0956 at 535.343 kb on - strand, within SMa0956 at 535.365 kb on - strand, within SMa0956 at 535.365 kb on - strand, within SMa0956 at 535.365 kb on - strand, within SMa0956 at 535.365 kb on - strand, within SMa0956 at 535.555 kb on + strand, within SMa0956 at 535.556 kb on - strand, within SMa0956 at 535.556 kb on - strand, within SMa0956 at 535.556 kb on - strand, within SMa0956 at 535.556 kb on - strand, within SMa0956 at 535.559 kb on + strand, within SMa0956 at 535.607 kb on + strand, within SMa0956 at 535.668 kb on + strand, within SMa0956 at 535.695 kb on + strand, within SMa0956 at 535.713 kb on + strand, within SMa0956 at 535.714 kb on - strand, within SMa0956 at 536.056 kb on - strand at 536.056 kb on - strand at 536.060 kb on + strand at 536.114 kb on - strand at 536.214 kb on + strand at 536.216 kb on + strand at 536.357 kb on + strand, within SMa0958 at 536.599 kb on + strand, within SMa0958 at 536.599 kb on + strand, within SMa0958 at 536.599 kb on + strand, within SMa0958 at 536.600 kb on - strand, within SMa0958 at 536.720 kb on + strand, within SMa0958 at 536.927 kb on - strand, within SMa0958 at 536.927 kb on - strand, within SMa0958 at 536.927 kb on - strand, within SMa0958 at 536.992 kb on + strand, within SMa0958 at 536.992 kb on + strand, within SMa0958 at 536.993 kb on - strand, within SMa0958 at 536.993 kb on - strand, within SMa0958 at 537.133 kb on + strand, within SMa0958 at 537.134 kb on - strand, within SMa0958 at 537.134 kb on - strand, within SMa0958 at 537.134 kb on - strand, within SMa0958 at 537.183 kb on - strand, within SMa0958 at 537.183 kb on - strand, within SMa0958 at 537.259 kb on + strand, within SMa0958 at 537.259 kb on + strand, within SMa0958 at 537.260 kb on - strand, within SMa0958 at 537.260 kb on - strand, within SMa0958 at 537.356 kb on + strand, within SMa0958 at 537.368 kb on + strand, within SMa0958 at 537.447 kb on + strand, within SMa0958 at 537.609 kb on + strand, within SMa0958 at 537.610 kb on - strand, within SMa0958 at 537.610 kb on - strand, within SMa0958 at 537.679 kb on + strand, within SMa0958 at 537.679 kb on + strand, within SMa0958 at 537.813 kb on - strand at 538.102 kb on + strand, within SMa0959 at 538.102 kb on + strand, within SMa0959 at 538.103 kb on - strand, within SMa0959 at 538.103 kb on - strand, within SMa0959 at 538.103 kb on - strand, within SMa0959 at 538.171 kb on + strand, within SMa0959 at 538.171 kb on + strand, within SMa0959 at 538.334 kb on + strand, within SMa0959 at 538.374 kb on + strand, within SMa0959 at 538.374 kb on + strand, within SMa0959 at 538.374 kb on + strand, within SMa0959 at 538.375 kb on - strand, within SMa0959 at 538.375 kb on - strand, within SMa0959 at 538.375 kb on - strand, within SMa0959 at 538.508 kb on - strand, within SMa0959 at 538.508 kb on - strand, within SMa0959 at 538.589 kb on + strand at 538.701 kb on + strand at 538.701 kb on + strand at 538.701 kb on + strand at 538.702 kb on - strand at 538.702 kb on - strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.703 kb on + strand at 538.704 kb on - strand at 538.705 kb on + strand at 538.706 kb on - strand at 538.801 kb on + strand, within SMa0961 at 538.866 kb on - strand, within SMa0961
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 535,254 + SMa0956 0.32 -0.5 535,255 - SMa0956 0.32 +0.2 535,274 + SMa0956 0.33 +0.5 535,324 + SMa0956 0.37 +0.1 535,342 + SMa0956 0.38 -1.4 535,343 - SMa0956 0.39 +0.4 535,365 - SMa0956 0.40 -0.2 535,365 - SMa0956 0.40 -1.1 535,365 - SMa0956 0.40 +0.6 535,365 - SMa0956 0.40 +0.1 535,555 + SMa0956 0.54 +0.3 535,556 - SMa0956 0.54 +0.2 535,556 - SMa0956 0.54 +0.0 535,556 - SMa0956 0.54 +0.6 535,556 - SMa0956 0.54 +0.1 535,559 + SMa0956 0.54 -0.5 535,607 + SMa0956 0.58 -0.0 535,668 + SMa0956 0.62 +1.0 535,695 + SMa0956 0.64 -0.8 535,713 + SMa0956 0.66 +0.1 535,714 - SMa0956 0.66 +0.5 536,056 - -0.0 536,056 - +0.2 536,060 + +0.6 536,114 - -1.6 536,214 + -1.0 536,216 + -0.1 536,357 + SMa0958 0.11 +0.3 536,599 + SMa0958 0.25 +0.0 536,599 + SMa0958 0.25 -1.4 536,599 + SMa0958 0.25 -0.5 536,600 - SMa0958 0.25 +0.6 536,720 + SMa0958 0.32 -0.4 536,927 - SMa0958 0.44 +0.3 536,927 - SMa0958 0.44 +0.0 536,927 - SMa0958 0.44 +0.5 536,992 + SMa0958 0.48 +0.4 536,992 + SMa0958 0.48 +0.6 536,993 - SMa0958 0.48 +0.6 536,993 - SMa0958 0.48 +0.1 537,133 + SMa0958 0.56 +0.5 537,134 - SMa0958 0.56 -0.6 537,134 - SMa0958 0.56 -1.7 537,134 - SMa0958 0.56 -0.1 537,183 - SMa0958 0.59 -2.1 537,183 - SMa0958 0.59 +0.5 537,259 + SMa0958 0.63 +0.1 537,259 + SMa0958 0.63 -0.2 537,260 - SMa0958 0.63 +1.6 537,260 - SMa0958 0.63 -0.1 537,356 + SMa0958 0.69 -0.3 537,368 + SMa0958 0.70 +0.9 537,447 + SMa0958 0.74 +2.7 537,609 + SMa0958 0.84 +0.9 537,610 - SMa0958 0.84 +1.1 537,610 - SMa0958 0.84 +0.0 537,679 + SMa0958 0.88 +0.9 537,679 + SMa0958 0.88 +0.1 537,813 - -0.7 538,102 + SMa0959 0.28 +2.0 538,102 + SMa0959 0.28 -0.2 538,103 - SMa0959 0.28 -0.4 538,103 - SMa0959 0.28 -0.6 538,103 - SMa0959 0.28 -0.1 538,171 + SMa0959 0.37 -0.6 538,171 + SMa0959 0.37 -0.3 538,334 + SMa0959 0.58 -0.5 538,374 + SMa0959 0.63 +0.2 538,374 + SMa0959 0.63 +0.8 538,374 + SMa0959 0.63 -0.3 538,375 - SMa0959 0.63 -1.1 538,375 - SMa0959 0.63 -0.6 538,375 - SMa0959 0.63 -2.1 538,508 - SMa0959 0.80 +0.4 538,508 - SMa0959 0.80 -0.3 538,589 + +0.3 538,701 + -0.2 538,701 + -0.2 538,701 + -0.6 538,702 - -0.3 538,702 - -0.6 538,703 + -0.3 538,703 + +0.6 538,703 + +0.5 538,703 + +0.1 538,703 + -0.9 538,704 - -0.2 538,705 + +0.2 538,706 - +0.5 538,801 + SMa0961 0.16 +0.3 538,866 - SMa0961 0.25 +1.3
Or see this region's nucleotide sequence