Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0638 and SMa0639 are separated by 404 nucleotides SMa0639 and SMa0640 are separated by 90 nucleotides SMa0640 and SMa0643 are separated by 852 nucleotides
SMa0638: SMa0638 - hypothetical protein, at 342,978 to 343,235
SMa0638
SMa0639: SMa0639 - hypothetical protein, at 343,640 to 344,044
SMa0639
SMa0640: SMa0640 - hypothetical protein, at 344,135 to 344,554
SMa0640
SMa0643: SMa0643 - transposase, at 345,407 to 345,667
SMa0643
Position (kb) 344
345 Strain fitness (log2 ratio) -2
-1
0
1
2 at 343.180 kb on - strand, within SMa0638 at 343.363 kb on - strand at 343.446 kb on + strand at 343.446 kb on + strand at 343.447 kb on - strand at 343.447 kb on - strand at 343.519 kb on + strand at 343.519 kb on + strand at 343.571 kb on + strand at 343.579 kb on - strand at 343.583 kb on - strand at 343.596 kb on - strand at 343.683 kb on + strand, within SMa0639 at 343.683 kb on + strand, within SMa0639 at 343.684 kb on - strand, within SMa0639 at 343.687 kb on + strand, within SMa0639 at 343.687 kb on + strand, within SMa0639 at 343.688 kb on - strand, within SMa0639 at 343.688 kb on - strand, within SMa0639 at 343.688 kb on - strand, within SMa0639 at 343.688 kb on - strand at 343.688 kb on - strand, within SMa0639 at 343.716 kb on + strand, within SMa0639 at 343.756 kb on + strand, within SMa0639 at 343.757 kb on - strand, within SMa0639 at 343.757 kb on - strand, within SMa0639 at 343.757 kb on - strand, within SMa0639 at 343.811 kb on + strand, within SMa0639 at 343.852 kb on - strand, within SMa0639 at 343.965 kb on - strand, within SMa0639 at 343.965 kb on - strand, within SMa0639 at 344.036 kb on + strand at 344.036 kb on + strand at 344.036 kb on + strand at 344.037 kb on - strand at 344.037 kb on - strand at 344.180 kb on - strand, within SMa0640 at 344.268 kb on + strand, within SMa0640 at 344.269 kb on - strand, within SMa0640 at 344.277 kb on + strand, within SMa0640 at 344.277 kb on + strand, within SMa0640 at 344.292 kb on - strand, within SMa0640 at 344.352 kb on + strand, within SMa0640 at 344.503 kb on - strand, within SMa0640 at 344.673 kb on + strand at 344.704 kb on + strand at 344.704 kb on + strand at 344.705 kb on - strand at 344.705 kb on - strand at 344.705 kb on - strand at 344.705 kb on - strand at 344.840 kb on + strand at 344.853 kb on - strand at 344.853 kb on - strand at 344.920 kb on + strand at 344.921 kb on - strand at 345.114 kb on + strand at 345.124 kb on - strand at 345.157 kb on + strand at 345.178 kb on + strand at 345.178 kb on + strand at 345.179 kb on - strand at 345.280 kb on + strand at 345.380 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 343,180 - SMa0638 0.78 -0.3 343,363 - +0.6 343,446 + -0.9 343,446 + +0.3 343,447 - +0.2 343,447 - -0.2 343,519 + -1.1 343,519 + +0.1 343,571 + -1.0 343,579 - +0.1 343,583 - +0.0 343,596 - +0.4 343,683 + SMa0639 0.11 +0.3 343,683 + SMa0639 0.11 -0.2 343,684 - SMa0639 0.11 +0.9 343,687 + SMa0639 0.12 -0.3 343,687 + SMa0639 0.12 -0.4 343,688 - SMa0639 0.12 +0.3 343,688 - SMa0639 0.12 +1.0 343,688 - SMa0639 0.12 +0.4 343,688 - +0.4 343,688 - SMa0639 0.12 -1.5 343,716 + SMa0639 0.19 +0.2 343,756 + SMa0639 0.29 -0.3 343,757 - SMa0639 0.29 -0.1 343,757 - SMa0639 0.29 +0.2 343,757 - SMa0639 0.29 -0.2 343,811 + SMa0639 0.42 +0.2 343,852 - SMa0639 0.52 +0.7 343,965 - SMa0639 0.80 -2.3 343,965 - SMa0639 0.80 -0.7 344,036 + -0.3 344,036 + +0.2 344,036 + -0.4 344,037 - -0.5 344,037 - +0.5 344,180 - SMa0640 0.11 +1.2 344,268 + SMa0640 0.32 +0.1 344,269 - SMa0640 0.32 -0.0 344,277 + SMa0640 0.34 +0.5 344,277 + SMa0640 0.34 +1.6 344,292 - SMa0640 0.37 -0.5 344,352 + SMa0640 0.52 -0.3 344,503 - SMa0640 0.88 -0.1 344,673 + +0.6 344,704 + +0.5 344,704 + +0.3 344,705 - -0.3 344,705 - +0.3 344,705 - +2.7 344,705 - +0.8 344,840 + -0.7 344,853 - -0.7 344,853 - +1.3 344,920 + +0.3 344,921 - +0.6 345,114 + -0.0 345,124 - +0.4 345,157 + +2.2 345,178 + +0.2 345,178 + +0.3 345,179 - -0.2 345,280 + -0.2 345,380 + +0.7
Or see this region's nucleotide sequence