Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0525 and SMa0526 overlap by 4 nucleotides SMa0526 and SMa0527 overlap by 4 nucleotides
SMa0525: SMa0525 - ABC transporter permease, at 282,774 to 284,579
SMa0525
SMa0526: SMa0526 - maltose/trehalose ABC transporter, at 284,576 to 285,622
SMa0526
SMa0527: SMa0527 - phosphatase, at 285,619 to 286,218
SMa0527
Position (kb) 284
285
286 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 283.576 kb on - strand, within SMa0525 at 283.611 kb on + strand, within SMa0525 at 283.612 kb on - strand, within SMa0525 at 283.786 kb on + strand, within SMa0525 at 283.827 kb on - strand, within SMa0525 at 284.121 kb on + strand, within SMa0525 at 284.122 kb on - strand, within SMa0525 at 284.167 kb on - strand, within SMa0525 at 284.205 kb on + strand, within SMa0525 at 284.205 kb on + strand, within SMa0525 at 284.254 kb on + strand, within SMa0525 at 284.347 kb on + strand, within SMa0525 at 284.440 kb on + strand at 284.449 kb on - strand at 284.455 kb on - strand at 284.580 kb on + strand at 284.581 kb on - strand at 284.581 kb on - strand at 284.615 kb on + strand at 284.616 kb on - strand at 284.635 kb on - strand at 284.704 kb on - strand, within SMa0526 at 284.715 kb on + strand, within SMa0526 at 284.837 kb on + strand, within SMa0526 at 284.837 kb on + strand, within SMa0526 at 284.837 kb on + strand, within SMa0526 at 284.838 kb on - strand, within SMa0526 at 284.838 kb on - strand, within SMa0526 at 284.855 kb on - strand, within SMa0526 at 285.152 kb on + strand, within SMa0526 at 285.152 kb on + strand, within SMa0526 at 285.153 kb on - strand, within SMa0526 at 285.190 kb on + strand, within SMa0526 at 285.321 kb on + strand, within SMa0526 at 285.333 kb on - strand, within SMa0526 at 285.446 kb on + strand, within SMa0526 at 285.638 kb on + strand at 285.801 kb on + strand, within SMa0527 at 285.802 kb on - strand, within SMa0527 at 285.919 kb on + strand, within SMa0527 at 285.920 kb on - strand, within SMa0527 at 285.943 kb on + strand, within SMa0527 at 285.943 kb on + strand, within SMa0527 at 285.944 kb on - strand, within SMa0527 at 286.131 kb on + strand, within SMa0527 at 286.132 kb on - strand, within SMa0527 at 286.132 kb on - strand, within SMa0527 at 286.253 kb on - strand at 286.253 kb on - strand at 286.253 kb on - strand at 286.253 kb on - strand at 286.253 kb on - strand at 286.348 kb on - strand at 286.358 kb on - strand at 286.386 kb on + strand at 286.386 kb on + strand at 286.387 kb on - strand at 286.420 kb on + strand at 286.420 kb on + strand at 286.420 kb on + strand at 286.420 kb on + strand at 286.420 kb on + strand at 286.549 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 283,576 - SMa0525 0.44 -0.4 283,611 + SMa0525 0.46 -1.6 283,612 - SMa0525 0.46 -0.1 283,786 + SMa0525 0.56 -0.8 283,827 - SMa0525 0.58 -1.6 284,121 + SMa0525 0.75 +0.7 284,122 - SMa0525 0.75 -0.7 284,167 - SMa0525 0.77 -1.3 284,205 + SMa0525 0.79 -0.8 284,205 + SMa0525 0.79 +0.4 284,254 + SMa0525 0.82 -0.3 284,347 + SMa0525 0.87 +0.1 284,440 + +0.9 284,449 - +0.6 284,455 - +1.1 284,580 + -0.1 284,581 - -0.3 284,581 - +0.6 284,615 + +1.2 284,616 - -0.0 284,635 - -0.1 284,704 - SMa0526 0.12 -0.9 284,715 + SMa0526 0.13 -0.3 284,837 + SMa0526 0.25 +5.2 284,837 + SMa0526 0.25 +1.2 284,837 + SMa0526 0.25 -0.3 284,838 - SMa0526 0.25 -0.1 284,838 - SMa0526 0.25 +0.1 284,855 - SMa0526 0.27 -0.7 285,152 + SMa0526 0.55 +0.2 285,152 + SMa0526 0.55 +0.4 285,153 - SMa0526 0.55 -0.2 285,190 + SMa0526 0.59 +0.7 285,321 + SMa0526 0.71 -1.0 285,333 - SMa0526 0.72 +0.1 285,446 + SMa0526 0.83 -0.6 285,638 + +3.6 285,801 + SMa0527 0.30 -1.4 285,802 - SMa0527 0.30 -2.0 285,919 + SMa0527 0.50 -1.7 285,920 - SMa0527 0.50 -0.2 285,943 + SMa0527 0.54 +0.1 285,943 + SMa0527 0.54 -0.1 285,944 - SMa0527 0.54 -0.6 286,131 + SMa0527 0.85 +0.8 286,132 - SMa0527 0.85 -0.5 286,132 - SMa0527 0.85 -0.4 286,253 - +0.5 286,253 - +0.2 286,253 - -0.4 286,253 - -1.5 286,253 - +0.3 286,348 - -0.4 286,358 - +1.4 286,386 + -0.5 286,386 + -0.2 286,387 - +0.2 286,420 + -0.6 286,420 + -0.2 286,420 + +1.3 286,420 + +0.3 286,420 + +0.2 286,549 + -0.2
Or see this region's nucleotide sequence