Strain Fitness in Sinorhizobium meliloti 1021 around SMa0469

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0467 and SMa0469 are separated by 41 nucleotidesSMa0469 and SMa0470 are separated by 8 nucleotides SMa0467: SMa0467 - ABC transporter permease, at 253,863 to 254,879 SMa0467 SMa0469: SMa0469 - ABC transporter permease, at 254,921 to 255,718 SMa0469 SMa0470: SMa0470 - ABC transporter ATP-binding protein, at 255,727 to 257,562 SMa0470 Position (kb) 254 255 256Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 253.979 kb on + strand, within SMa0467at 253.979 kb on + strand, within SMa0467at 253.980 kb on - strand, within SMa0467at 253.980 kb on - strand, within SMa0467at 253.980 kb on - strand, within SMa0467at 253.981 kb on + strand, within SMa0467at 253.981 kb on + strand, within SMa0467at 253.981 kb on + strand, within SMa0467at 253.982 kb on - strand, within SMa0467at 254.014 kb on + strand, within SMa0467at 254.015 kb on - strand, within SMa0467at 254.015 kb on - strand, within SMa0467at 254.015 kb on - strand, within SMa0467at 254.015 kb on - strand, within SMa0467at 254.015 kb on - strand, within SMa0467at 254.124 kb on + strand, within SMa0467at 254.125 kb on - strand, within SMa0467at 254.125 kb on - strand, within SMa0467at 254.351 kb on + strand, within SMa0467at 254.352 kb on - strand, within SMa0467at 254.388 kb on + strand, within SMa0467at 254.388 kb on + strand, within SMa0467at 254.388 kb on + strand, within SMa0467at 254.389 kb on - strand, within SMa0467at 254.389 kb on - strand, within SMa0467at 254.389 kb on - strand, within SMa0467at 254.556 kb on + strand, within SMa0467at 254.557 kb on - strand, within SMa0467at 254.597 kb on + strand, within SMa0467at 254.611 kb on - strand, within SMa0467at 254.611 kb on - strand, within SMa0467at 254.698 kb on + strand, within SMa0467at 254.699 kb on - strand, within SMa0467at 254.699 kb on - strand, within SMa0467at 254.699 kb on - strand, within SMa0467at 254.832 kb on + strandat 254.833 kb on - strandat 254.834 kb on + strandat 254.835 kb on - strandat 254.959 kb on + strandat 254.959 kb on + strandat 254.960 kb on - strandat 254.960 kb on - strandat 255.082 kb on - strand, within SMa0469at 255.114 kb on - strand, within SMa0469at 255.114 kb on - strand, within SMa0469at 255.401 kb on + strand, within SMa0469at 255.401 kb on + strandat 255.402 kb on - strand, within SMa0469at 255.402 kb on - strand, within SMa0469at 255.402 kb on - strand, within SMa0469at 255.442 kb on + strand, within SMa0469at 255.491 kb on + strand, within SMa0469at 255.492 kb on - strand, within SMa0469at 255.492 kb on - strand, within SMa0469at 255.492 kb on - strand, within SMa0469at 255.495 kb on + strand, within SMa0469at 255.604 kb on + strand, within SMa0469at 255.604 kb on + strand, within SMa0469at 255.607 kb on + strand, within SMa0469at 255.607 kb on + strand, within SMa0469at 255.608 kb on - strand, within SMa0469at 255.880 kb on - strandat 256.014 kb on + strand, within SMa0470at 256.113 kb on - strand, within SMa0470at 256.128 kb on + strand, within SMa0470at 256.129 kb on - strand, within SMa0470at 256.290 kb on - strand, within SMa0470at 256.312 kb on - strand, within SMa0470at 256.312 kb on - strand, within SMa0470at 256.405 kb on + strand, within SMa0470at 256.405 kb on + strand, within SMa0470at 256.405 kb on + strand, within SMa0470at 256.405 kb on + strand, within SMa0470at 256.405 kb on + strand, within SMa0470at 256.406 kb on - strand, within SMa0470at 256.406 kb on - strand, within SMa0470at 256.406 kb on - strand, within SMa0470at 256.406 kb on - strand, within SMa0470at 256.406 kb on - strand, within SMa0470at 256.406 kb on - strand, within SMa0470at 256.414 kb on + strand, within SMa0470at 256.477 kb on + strand, within SMa0470at 256.478 kb on - strand, within SMa0470at 256.478 kb on - strand, within SMa0470at 256.478 kb on - strand, within SMa0470at 256.513 kb on + strand, within SMa0470at 256.515 kb on + strand, within SMa0470at 256.677 kb on + strand, within SMa0470at 256.677 kb on + strand, within SMa0470at 256.677 kb on + strand, within SMa0470at 256.677 kb on + strand, within SMa0470at 256.677 kb on + strand, within SMa0470at 256.678 kb on - strand, within SMa0470

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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253,979 + SMa0467 0.11 -0.7
253,979 + SMa0467 0.11 -1.2
253,980 - SMa0467 0.12 +0.8
253,980 - SMa0467 0.12 +1.4
253,980 - SMa0467 0.12 -0.5
253,981 + SMa0467 0.12 -0.3
253,981 + SMa0467 0.12 -0.3
253,981 + SMa0467 0.12 -0.5
253,982 - SMa0467 0.12 -0.5
254,014 + SMa0467 0.15 -0.9
254,015 - SMa0467 0.15 -0.3
254,015 - SMa0467 0.15 +0.7
254,015 - SMa0467 0.15 -0.6
254,015 - SMa0467 0.15 +0.3
254,015 - SMa0467 0.15 +0.8
254,124 + SMa0467 0.26 +0.6
254,125 - SMa0467 0.26 +0.8
254,125 - SMa0467 0.26 -3.1
254,351 + SMa0467 0.48 +0.3
254,352 - SMa0467 0.48 +0.5
254,388 + SMa0467 0.52 -0.3
254,388 + SMa0467 0.52 +0.1
254,388 + SMa0467 0.52 +0.0
254,389 - SMa0467 0.52 +0.3
254,389 - SMa0467 0.52 -2.0
254,389 - SMa0467 0.52 +0.4
254,556 + SMa0467 0.68 -0.7
254,557 - SMa0467 0.68 +0.0
254,597 + SMa0467 0.72 -0.5
254,611 - SMa0467 0.74 +0.1
254,611 - SMa0467 0.74 -0.4
254,698 + SMa0467 0.82 +0.3
254,699 - SMa0467 0.82 -0.7
254,699 - SMa0467 0.82 +0.4
254,699 - SMa0467 0.82 -0.5
254,832 + +0.2
254,833 - +0.4
254,834 + -0.8
254,835 - -0.6
254,959 + -0.2
254,959 + -0.1
254,960 - +0.2
254,960 - -0.3
255,082 - SMa0469 0.20 -0.3
255,114 - SMa0469 0.24 +0.3
255,114 - SMa0469 0.24 +0.5
255,401 + SMa0469 0.60 +0.6
255,401 + +1.8
255,402 - SMa0469 0.60 +0.2
255,402 - SMa0469 0.60 -0.1
255,402 - SMa0469 0.60 -0.2
255,442 + SMa0469 0.65 -0.1
255,491 + SMa0469 0.71 +0.1
255,492 - SMa0469 0.72 +5.6
255,492 - SMa0469 0.72 +0.4
255,492 - SMa0469 0.72 +1.4
255,495 + SMa0469 0.72 -0.1
255,604 + SMa0469 0.86 -1.6
255,604 + SMa0469 0.86 +1.3
255,607 + SMa0469 0.86 -1.8
255,607 + SMa0469 0.86 +0.4
255,608 - SMa0469 0.86 +0.2
255,880 - +1.1
256,014 + SMa0470 0.16 -0.3
256,113 - SMa0470 0.21 -0.0
256,128 + SMa0470 0.22 +0.1
256,129 - SMa0470 0.22 +1.4
256,290 - SMa0470 0.31 +0.4
256,312 - SMa0470 0.32 +1.3
256,312 - SMa0470 0.32 -0.6
256,405 + SMa0470 0.37 -0.1
256,405 + SMa0470 0.37 +0.5
256,405 + SMa0470 0.37 -2.1
256,405 + SMa0470 0.37 +0.4
256,405 + SMa0470 0.37 +0.9
256,406 - SMa0470 0.37 -0.5
256,406 - SMa0470 0.37 -0.5
256,406 - SMa0470 0.37 -0.3
256,406 - SMa0470 0.37 +0.3
256,406 - SMa0470 0.37 -0.1
256,406 - SMa0470 0.37 -0.7
256,414 + SMa0470 0.37 -0.6
256,477 + SMa0470 0.41 -0.4
256,478 - SMa0470 0.41 -0.5
256,478 - SMa0470 0.41 +0.3
256,478 - SMa0470 0.41 -0.2
256,513 + SMa0470 0.43 +0.5
256,515 + SMa0470 0.43 -0.1
256,677 + SMa0470 0.52 +0.2
256,677 + SMa0470 0.52 -1.4
256,677 + SMa0470 0.52 +0.4
256,677 + SMa0470 0.52 +0.4
256,677 + SMa0470 0.52 +0.4
256,678 - SMa0470 0.52 -0.0

Or see this region's nucleotide sequence