Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0190 and SMa0191 are separated by 609 nucleotides SMa0191 and SMa0193 overlap by 4 nucleotides SMa0193 and SMa0196 are separated by 296 nucleotides
SMa0190: SMa0190 - transcriptional regulator, at 104,560 to 105,189
SMa0190
SMa0191: SMa0191 - hypothetical protein, at 105,799 to 106,329
SMa0191
SMa0193: SMa0193 - hypothetical protein, at 106,326 to 106,652
SMa0193
SMa0196: SMa0196 - gluconolactonase, at 106,949 to 107,863
SMa0196
Position (kb)
105
106
107 Strain fitness (log2 ratio)
-1
0
1 at 105.048 kb on + strand, within SMa0190 at 105.061 kb on + strand, within SMa0190 at 105.061 kb on + strand, within SMa0190 at 105.062 kb on - strand, within SMa0190 at 105.092 kb on - strand, within SMa0190 at 105.131 kb on + strand at 105.131 kb on + strand at 105.131 kb on + strand at 105.131 kb on + strand at 105.187 kb on + strand at 105.255 kb on - strand at 105.255 kb on - strand at 105.259 kb on + strand at 105.259 kb on + strand at 105.259 kb on + strand at 105.259 kb on + strand at 105.260 kb on - strand at 105.260 kb on - strand at 105.260 kb on - strand at 105.260 kb on - strand at 105.260 kb on - strand at 105.264 kb on - strand at 105.305 kb on + strand at 105.365 kb on - strand at 105.394 kb on + strand at 105.394 kb on + strand at 105.394 kb on + strand at 105.450 kb on + strand at 105.479 kb on + strand at 105.479 kb on + strand at 105.479 kb on + strand at 105.479 kb on + strand at 105.479 kb on + strand at 105.479 kb on + strand at 105.479 kb on + strand at 105.480 kb on - strand at 105.480 kb on - strand at 105.483 kb on + strand at 105.549 kb on + strand at 105.550 kb on - strand at 105.666 kb on - strand at 105.666 kb on - strand at 105.675 kb on + strand at 105.728 kb on + strand at 105.728 kb on + strand at 105.729 kb on - strand at 105.729 kb on - strand at 105.729 kb on - strand at 105.737 kb on + strand at 105.737 kb on + strand at 105.777 kb on - strand at 105.875 kb on - strand, within SMa0191 at 105.976 kb on + strand, within SMa0191 at 105.977 kb on - strand, within SMa0191 at 106.080 kb on + strand, within SMa0191 at 106.109 kb on + strand, within SMa0191 at 106.110 kb on - strand, within SMa0191 at 106.110 kb on - strand, within SMa0191 at 106.167 kb on + strand, within SMa0191 at 106.167 kb on + strand, within SMa0191 at 106.167 kb on + strand, within SMa0191 at 106.167 kb on + strand, within SMa0191 at 106.250 kb on + strand, within SMa0191 at 106.347 kb on + strand at 106.449 kb on - strand, within SMa0193 at 106.735 kb on + strand at 106.841 kb on + strand at 106.950 kb on + strand at 106.981 kb on - strand at 106.989 kb on + strand at 107.243 kb on + strand, within SMa0196
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 105,048 + SMa0190 0.77 +0.4 105,061 + SMa0190 0.80 +0.7 105,061 + SMa0190 0.80 +0.2 105,062 - SMa0190 0.80 -0.8 105,092 - SMa0190 0.84 +0.6 105,131 + -0.3 105,131 + +0.9 105,131 + -0.4 105,131 + +0.7 105,187 + +0.1 105,255 - -1.2 105,255 - -0.3 105,259 + -0.6 105,259 + +0.1 105,259 + -0.5 105,259 + +0.2 105,260 - -1.4 105,260 - +0.1 105,260 - -0.2 105,260 - -0.1 105,260 - +0.3 105,264 - +0.3 105,305 + -0.4 105,365 - +0.9 105,394 + -0.8 105,394 + +1.5 105,394 + +0.4 105,450 + -0.7 105,479 + -1.5 105,479 + -0.8 105,479 + +0.3 105,479 + -0.0 105,479 + +0.3 105,479 + -0.2 105,479 + -0.8 105,480 - +0.0 105,480 - +0.1 105,483 + -1.0 105,549 + -0.0 105,550 - +0.8 105,666 - +0.9 105,666 - +0.4 105,675 + -0.7 105,728 + +0.0 105,728 + +0.1 105,729 - +0.6 105,729 - -0.3 105,729 - -0.4 105,737 + +0.0 105,737 + +0.2 105,777 - +0.1 105,875 - SMa0191 0.14 +0.5 105,976 + SMa0191 0.33 -0.2 105,977 - SMa0191 0.34 +0.6 106,080 + SMa0191 0.53 +1.1 106,109 + SMa0191 0.58 +0.3 106,110 - SMa0191 0.59 -0.1 106,110 - SMa0191 0.59 +0.5 106,167 + SMa0191 0.69 +1.0 106,167 + SMa0191 0.69 +0.1 106,167 + SMa0191 0.69 +0.2 106,167 + SMa0191 0.69 +0.4 106,250 + SMa0191 0.85 -0.1 106,347 + +0.6 106,449 - SMa0193 0.38 +0.7 106,735 + -0.4 106,841 + -0.2 106,950 + -0.4 106,981 - +0.4 106,989 + +0.2 107,243 + SMa0196 0.32 -0.5
Or see this region's nucleotide sequence