Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0105 and SMa0106 are separated by 5 nucleotides SMa0106 and SMa0108 overlap by 4 nucleotides SMa0108 and SMa0110 overlap by 4 nucleotides
SMa0105: SMa0105 - ABC transporter permease, at 54,624 to 55,559
SMa0105
SMa0106: SMa0106 - ABC transporter permease, at 55,565 to 56,386
SMa0106
SMa0108: SMa0108 - ABC transporter ATP-binding protein, at 56,383 to 57,297
SMa0108
SMa0110: SMa0110 - ABC transporter ATP-binding protein, at 57,294 to 58,256
SMa0110
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1 at 54.598 kb on - strand at 54.662 kb on - strand at 54.690 kb on - strand at 54.690 kb on - strand at 54.692 kb on - strand at 54.692 kb on - strand at 54.834 kb on + strand, within SMa0105 at 54.834 kb on + strand, within SMa0105 at 54.834 kb on + strand, within SMa0105 at 54.835 kb on - strand, within SMa0105 at 54.835 kb on - strand, within SMa0105 at 54.835 kb on - strand, within SMa0105 at 54.835 kb on - strand, within SMa0105 at 55.019 kb on + strand, within SMa0105 at 55.089 kb on + strand, within SMa0105 at 55.089 kb on + strand, within SMa0105 at 55.089 kb on + strand, within SMa0105 at 55.090 kb on - strand, within SMa0105 at 55.090 kb on - strand, within SMa0105 at 55.090 kb on - strand, within SMa0105 at 55.524 kb on + strand at 55.525 kb on - strand at 55.847 kb on + strand, within SMa0106 at 55.984 kb on + strand, within SMa0106 at 56.048 kb on + strand, within SMa0106 at 56.049 kb on - strand, within SMa0106 at 56.128 kb on + strand, within SMa0106 at 56.497 kb on + strand, within SMa0108 at 56.497 kb on + strand, within SMa0108 at 56.580 kb on - strand, within SMa0108 at 56.840 kb on - strand, within SMa0108 at 56.876 kb on + strand, within SMa0108 at 56.969 kb on + strand, within SMa0108 at 56.970 kb on - strand, within SMa0108 at 57.073 kb on + strand, within SMa0108 at 57.073 kb on + strand, within SMa0108 at 57.136 kb on + strand, within SMa0108 at 57.136 kb on + strand, within SMa0108 at 57.136 kb on + strand, within SMa0108 at 57.137 kb on - strand, within SMa0108 at 57.137 kb on - strand, within SMa0108 at 57.139 kb on - strand, within SMa0108
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 54,598 - -0.6 54,662 - -1.8 54,690 - -0.6 54,690 - +0.3 54,692 - -0.9 54,692 - +0.5 54,834 + SMa0105 0.22 +0.7 54,834 + SMa0105 0.22 -0.5 54,834 + SMa0105 0.22 -0.9 54,835 - SMa0105 0.23 +0.3 54,835 - SMa0105 0.23 -0.0 54,835 - SMa0105 0.23 +0.0 54,835 - SMa0105 0.23 +0.0 55,019 + SMa0105 0.42 +0.4 55,089 + SMa0105 0.50 -0.6 55,089 + SMa0105 0.50 +0.7 55,089 + SMa0105 0.50 -0.4 55,090 - SMa0105 0.50 -0.2 55,090 - SMa0105 0.50 +0.6 55,090 - SMa0105 0.50 +0.6 55,524 + -0.4 55,525 - -0.3 55,847 + SMa0106 0.34 -1.1 55,984 + SMa0106 0.51 -0.7 56,048 + SMa0106 0.59 -0.1 56,049 - SMa0106 0.59 +0.9 56,128 + SMa0106 0.68 -0.6 56,497 + SMa0108 0.12 -0.2 56,497 + SMa0108 0.12 -0.1 56,580 - SMa0108 0.22 +1.3 56,840 - SMa0108 0.50 +0.8 56,876 + SMa0108 0.54 -0.2 56,969 + SMa0108 0.64 +1.0 56,970 - SMa0108 0.64 +0.6 57,073 + SMa0108 0.75 -0.4 57,073 + SMa0108 0.75 -0.1 57,136 + SMa0108 0.82 +0.9 57,136 + SMa0108 0.82 -0.8 57,136 + SMa0108 0.82 -1.0 57,137 - SMa0108 0.82 -0.0 57,137 - SMa0108 0.82 -0.1 57,139 - SMa0108 0.83 -0.2
Or see this region's nucleotide sequence