Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0058 and SMa0059 are separated by 14 nucleotides SMa0059 and SMa0060 overlap by 1 nucleotides
SMa0058: SMa0058 - N-acylglucosamine 2-epimerase, at 29,492 to 30,688
SMa0058
SMa0059: SMa0059 - short-chain alcohol dehydrogenase, at 30,703 to 31,488
SMa0059
SMa0060: SMa0060 - gluconolactonase, at 31,488 to 32,423
SMa0060
Position (kb) 30
31
32 Strain fitness (log2 ratio) -2
-1
0
1
2 at 29.754 kb on + strand, within SMa0058 at 29.755 kb on - strand, within SMa0058 at 29.796 kb on + strand, within SMa0058 at 29.796 kb on + strand, within SMa0058 at 29.797 kb on - strand, within SMa0058 at 29.797 kb on - strand, within SMa0058 at 29.797 kb on - strand, within SMa0058 at 29.797 kb on - strand, within SMa0058 at 29.949 kb on + strand, within SMa0058 at 29.986 kb on - strand, within SMa0058 at 30.015 kb on + strand, within SMa0058 at 30.016 kb on - strand, within SMa0058 at 30.120 kb on + strand, within SMa0058 at 30.120 kb on + strand, within SMa0058 at 30.213 kb on + strand, within SMa0058 at 30.213 kb on + strand, within SMa0058 at 30.342 kb on + strand, within SMa0058 at 30.390 kb on + strand, within SMa0058 at 30.393 kb on + strand, within SMa0058 at 30.394 kb on - strand, within SMa0058 at 30.433 kb on - strand, within SMa0058 at 30.433 kb on - strand, within SMa0058 at 30.437 kb on + strand, within SMa0058 at 30.437 kb on + strand, within SMa0058 at 30.437 kb on + strand, within SMa0058 at 30.437 kb on + strand, within SMa0058 at 30.438 kb on - strand, within SMa0058 at 30.438 kb on - strand, within SMa0058 at 30.438 kb on - strand, within SMa0058 at 30.438 kb on - strand, within SMa0058 at 30.438 kb on - strand, within SMa0058 at 30.499 kb on - strand, within SMa0058 at 30.499 kb on - strand, within SMa0058 at 30.570 kb on + strand at 30.579 kb on + strand at 30.579 kb on + strand at 30.619 kb on - strand at 30.966 kb on + strand, within SMa0059 at 30.967 kb on - strand, within SMa0059 at 30.967 kb on - strand, within SMa0059 at 31.035 kb on - strand, within SMa0059 at 31.061 kb on + strand, within SMa0059 at 31.062 kb on - strand, within SMa0059 at 31.062 kb on - strand, within SMa0059 at 31.062 kb on - strand, within SMa0059 at 31.242 kb on + strand, within SMa0059 at 31.602 kb on - strand, within SMa0060 at 31.645 kb on + strand, within SMa0060 at 31.646 kb on - strand, within SMa0060 at 31.646 kb on - strand, within SMa0060 at 31.891 kb on + strand, within SMa0060 at 31.891 kb on + strand, within SMa0060 at 31.892 kb on - strand, within SMa0060 at 31.966 kb on + strand, within SMa0060 at 31.966 kb on + strand, within SMa0060 at 31.966 kb on + strand, within SMa0060 at 31.967 kb on - strand, within SMa0060 at 31.973 kb on + strand, within SMa0060 at 32.014 kb on + strand, within SMa0060 at 32.039 kb on + strand, within SMa0060 at 32.040 kb on - strand, within SMa0060 at 32.338 kb on + strand at 32.338 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 29,754 + SMa0058 0.22 -0.7 29,755 - SMa0058 0.22 -1.1 29,796 + SMa0058 0.25 -1.0 29,796 + SMa0058 0.25 -0.6 29,797 - SMa0058 0.25 -0.2 29,797 - SMa0058 0.25 -1.8 29,797 - SMa0058 0.25 +0.3 29,797 - SMa0058 0.25 -0.4 29,949 + SMa0058 0.38 -0.6 29,986 - SMa0058 0.41 -0.7 30,015 + SMa0058 0.44 +1.0 30,016 - SMa0058 0.44 -0.8 30,120 + SMa0058 0.52 -0.6 30,120 + SMa0058 0.52 -0.2 30,213 + SMa0058 0.60 +0.0 30,213 + SMa0058 0.60 +1.0 30,342 + SMa0058 0.71 -0.4 30,390 + SMa0058 0.75 -0.1 30,393 + SMa0058 0.75 +1.3 30,394 - SMa0058 0.75 -0.3 30,433 - SMa0058 0.79 -0.0 30,433 - SMa0058 0.79 +1.2 30,437 + SMa0058 0.79 -0.4 30,437 + SMa0058 0.79 -0.2 30,437 + SMa0058 0.79 +2.5 30,437 + SMa0058 0.79 -0.5 30,438 - SMa0058 0.79 +0.2 30,438 - SMa0058 0.79 +0.0 30,438 - SMa0058 0.79 -0.3 30,438 - SMa0058 0.79 -0.7 30,438 - SMa0058 0.79 -0.7 30,499 - SMa0058 0.84 -0.9 30,499 - SMa0058 0.84 -0.4 30,570 + +0.9 30,579 + -0.0 30,579 + -0.2 30,619 - -1.1 30,966 + SMa0059 0.33 +0.5 30,967 - SMa0059 0.34 +0.2 30,967 - SMa0059 0.34 -0.2 31,035 - SMa0059 0.42 +0.1 31,061 + SMa0059 0.46 +0.6 31,062 - SMa0059 0.46 +0.5 31,062 - SMa0059 0.46 +2.5 31,062 - SMa0059 0.46 +2.1 31,242 + SMa0059 0.69 -0.8 31,602 - SMa0060 0.12 -0.0 31,645 + SMa0060 0.17 -0.3 31,646 - SMa0060 0.17 -0.5 31,646 - SMa0060 0.17 +0.2 31,891 + SMa0060 0.43 -1.0 31,891 + SMa0060 0.43 -2.7 31,892 - SMa0060 0.43 -0.2 31,966 + SMa0060 0.51 +0.8 31,966 + SMa0060 0.51 -0.1 31,966 + SMa0060 0.51 +0.1 31,967 - SMa0060 0.51 +0.1 31,973 + SMa0060 0.52 -0.0 32,014 + SMa0060 0.56 +0.3 32,039 + SMa0060 0.59 -1.1 32,040 - SMa0060 0.59 +0.5 32,338 + +0.3 32,338 + -0.4
Or see this region's nucleotide sequence