Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21642

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21641 and SM_b21642 are separated by 244 nucleotidesSM_b21642 and SM_b21643 are separated by 310 nucleotides SM_b21641: SM_b21641 - ArsR family transcriptional regulator, at 1,669,034 to 1,669,954 _b21641 SM_b21642: SM_b21642 - hypothetical protein, at 1,670,199 to 1,670,714 _b21642 SM_b21643: SM_b21643 - alpha-galactosidase (melibiase) protein, at 1,671,025 to 1,672,398 _b21643 Position (kb) 1670 1671Strain fitness (log2 ratio) -1 0 1 2at 1669.289 kb on + strand, within SM_b21641at 1669.389 kb on + strand, within SM_b21641at 1669.689 kb on + strand, within SM_b21641at 1669.778 kb on - strand, within SM_b21641at 1669.864 kb on + strandat 1669.864 kb on + strandat 1669.865 kb on - strandat 1670.052 kb on - strandat 1670.065 kb on + strandat 1670.065 kb on + strandat 1670.066 kb on - strandat 1670.066 kb on - strandat 1670.066 kb on - strandat 1670.104 kb on + strandat 1670.219 kb on + strandat 1670.439 kb on + strand, within SM_b21642at 1670.440 kb on - strand, within SM_b21642at 1670.471 kb on + strand, within SM_b21642at 1670.477 kb on + strand, within SM_b21642at 1670.478 kb on - strand, within SM_b21642at 1670.715 kb on + strandat 1670.715 kb on + strandat 1670.726 kb on + strandat 1670.726 kb on + strandat 1670.727 kb on - strandat 1670.844 kb on - strandat 1670.844 kb on - strandat 1670.845 kb on + strandat 1670.877 kb on + strandat 1670.886 kb on - strandat 1671.270 kb on + strand, within SM_b21643at 1671.272 kb on + strand, within SM_b21643at 1671.272 kb on + strandat 1671.272 kb on + strand, within SM_b21643at 1671.272 kb on + strand, within SM_b21643at 1671.273 kb on - strand, within SM_b21643at 1671.371 kb on + strand, within SM_b21643at 1671.371 kb on + strand, within SM_b21643at 1671.371 kb on + strand, within SM_b21643at 1671.422 kb on + strand, within SM_b21643at 1671.422 kb on + strand, within SM_b21643at 1671.623 kb on + strand, within SM_b21643at 1671.647 kb on + strand, within SM_b21643at 1671.647 kb on + strand, within SM_b21643at 1671.648 kb on - strand, within SM_b21643

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,669,289 + SM_b21641 0.28 -0.9
1,669,389 + SM_b21641 0.39 -0.7
1,669,689 + SM_b21641 0.71 -1.4
1,669,778 - SM_b21641 0.81 +0.2
1,669,864 + -0.6
1,669,864 + +0.4
1,669,865 - +0.3
1,670,052 - +0.3
1,670,065 + -0.2
1,670,065 + -0.4
1,670,066 - +0.8
1,670,066 - -0.1
1,670,066 - -0.4
1,670,104 + -0.2
1,670,219 + +0.6
1,670,439 + SM_b21642 0.47 +1.0
1,670,440 - SM_b21642 0.47 -0.1
1,670,471 + SM_b21642 0.53 +0.3
1,670,477 + SM_b21642 0.54 +0.8
1,670,478 - SM_b21642 0.54 -0.6
1,670,715 + -1.5
1,670,715 + +0.1
1,670,726 + +0.8
1,670,726 + +1.4
1,670,727 - -0.8
1,670,844 - -0.4
1,670,844 - -0.7
1,670,845 + +0.1
1,670,877 + -0.1
1,670,886 - -1.1
1,671,270 + SM_b21643 0.18 -0.0
1,671,272 + SM_b21643 0.18 -1.1
1,671,272 + +1.4
1,671,272 + SM_b21643 0.18 +0.1
1,671,272 + SM_b21643 0.18 +0.1
1,671,273 - SM_b21643 0.18 +0.2
1,671,371 + SM_b21643 0.25 -1.2
1,671,371 + SM_b21643 0.25 -0.2
1,671,371 + SM_b21643 0.25 +0.0
1,671,422 + SM_b21643 0.29 +1.2
1,671,422 + SM_b21643 0.29 -0.2
1,671,623 + SM_b21643 0.44 -0.5
1,671,647 + SM_b21643 0.45 +1.8
1,671,647 + SM_b21643 0.45 +0.2
1,671,648 - SM_b21643 0.45 -1.2

Or see this region's nucleotide sequence