Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21641 and SM_b21642 are separated by 244 nucleotides SM_b21642 and SM_b21643 are separated by 310 nucleotides
SM_b21641: SM_b21641 - ArsR family transcriptional regulator, at 1,669,034 to 1,669,954
_b21641
SM_b21642: SM_b21642 - hypothetical protein, at 1,670,199 to 1,670,714
_b21642
SM_b21643: SM_b21643 - alpha-galactosidase (melibiase) protein, at 1,671,025 to 1,672,398
_b21643
Position (kb)
1670
1671 Strain fitness (log2 ratio)
-1
0
1
2 at 1669.289 kb on + strand, within SM_b21641 at 1669.389 kb on + strand, within SM_b21641 at 1669.689 kb on + strand, within SM_b21641 at 1669.778 kb on - strand, within SM_b21641 at 1669.864 kb on + strand at 1669.864 kb on + strand at 1669.865 kb on - strand at 1670.052 kb on - strand at 1670.065 kb on + strand at 1670.065 kb on + strand at 1670.066 kb on - strand at 1670.066 kb on - strand at 1670.066 kb on - strand at 1670.104 kb on + strand at 1670.219 kb on + strand at 1670.439 kb on + strand, within SM_b21642 at 1670.440 kb on - strand, within SM_b21642 at 1670.471 kb on + strand, within SM_b21642 at 1670.477 kb on + strand, within SM_b21642 at 1670.478 kb on - strand, within SM_b21642 at 1670.715 kb on + strand at 1670.715 kb on + strand at 1670.726 kb on + strand at 1670.726 kb on + strand at 1670.727 kb on - strand at 1670.844 kb on - strand at 1670.844 kb on - strand at 1670.845 kb on + strand at 1670.877 kb on + strand at 1670.886 kb on - strand at 1671.270 kb on + strand, within SM_b21643 at 1671.272 kb on + strand, within SM_b21643 at 1671.272 kb on + strand at 1671.272 kb on + strand, within SM_b21643 at 1671.272 kb on + strand, within SM_b21643 at 1671.273 kb on - strand, within SM_b21643 at 1671.371 kb on + strand, within SM_b21643 at 1671.371 kb on + strand, within SM_b21643 at 1671.371 kb on + strand, within SM_b21643 at 1671.422 kb on + strand, within SM_b21643 at 1671.422 kb on + strand, within SM_b21643 at 1671.623 kb on + strand, within SM_b21643 at 1671.647 kb on + strand, within SM_b21643 at 1671.647 kb on + strand, within SM_b21643 at 1671.648 kb on - strand, within SM_b21643
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,669,289 + SM_b21641 0.28 -0.9 1,669,389 + SM_b21641 0.39 -0.7 1,669,689 + SM_b21641 0.71 -1.4 1,669,778 - SM_b21641 0.81 +0.2 1,669,864 + -0.6 1,669,864 + +0.4 1,669,865 - +0.3 1,670,052 - +0.3 1,670,065 + -0.2 1,670,065 + -0.4 1,670,066 - +0.8 1,670,066 - -0.1 1,670,066 - -0.4 1,670,104 + -0.2 1,670,219 + +0.6 1,670,439 + SM_b21642 0.47 +1.0 1,670,440 - SM_b21642 0.47 -0.1 1,670,471 + SM_b21642 0.53 +0.3 1,670,477 + SM_b21642 0.54 +0.8 1,670,478 - SM_b21642 0.54 -0.6 1,670,715 + -1.5 1,670,715 + +0.1 1,670,726 + +0.8 1,670,726 + +1.4 1,670,727 - -0.8 1,670,844 - -0.4 1,670,844 - -0.7 1,670,845 + +0.1 1,670,877 + -0.1 1,670,886 - -1.1 1,671,270 + SM_b21643 0.18 -0.0 1,671,272 + SM_b21643 0.18 -1.1 1,671,272 + +1.4 1,671,272 + SM_b21643 0.18 +0.1 1,671,272 + SM_b21643 0.18 +0.1 1,671,273 - SM_b21643 0.18 +0.2 1,671,371 + SM_b21643 0.25 -1.2 1,671,371 + SM_b21643 0.25 -0.2 1,671,371 + SM_b21643 0.25 +0.0 1,671,422 + SM_b21643 0.29 +1.2 1,671,422 + SM_b21643 0.29 -0.2 1,671,623 + SM_b21643 0.44 -0.5 1,671,647 + SM_b21643 0.45 +1.8 1,671,647 + SM_b21643 0.45 +0.2 1,671,648 - SM_b21643 0.45 -1.2
Or see this region's nucleotide sequence