Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21595 and SM_b21596 are separated by 64 nucleotides SM_b21596 and SM_b21597 are separated by 13 nucleotides SM_b21597 and SM_b21598 are separated by 233 nucleotides
SM_b21595: SM_b21595 - sugar uptake ABC transporter substrate-binding protein precursor, at 1,135,446 to 1,136,678
_b21595
SM_b21596: SM_b21596 - hypothetical protein, at 1,136,743 to 1,137,645
_b21596
SM_b21597: SM_b21597 - exported oxidoreductase, at 1,137,659 to 1,138,690
_b21597
SM_b21598: SM_b21598 - transcriptional regulator, at 1,138,924 to 1,139,973
_b21598
Position (kb)
1137
1138
1139 Strain fitness (log2 ratio)
-1
0
1 at 1136.662 kb on + strand at 1136.662 kb on + strand at 1136.666 kb on + strand at 1136.667 kb on - strand at 1136.834 kb on + strand, within SM_b21596 at 1136.836 kb on + strand, within SM_b21596 at 1136.836 kb on + strand, within SM_b21596 at 1136.836 kb on + strand, within SM_b21596 at 1136.837 kb on - strand, within SM_b21596 at 1137.012 kb on + strand, within SM_b21596 at 1137.029 kb on - strand, within SM_b21596 at 1137.075 kb on - strand, within SM_b21596 at 1137.075 kb on - strand, within SM_b21596 at 1137.135 kb on - strand, within SM_b21596 at 1137.275 kb on + strand, within SM_b21596 at 1137.572 kb on - strand at 1137.999 kb on + strand, within SM_b21597 at 1138.060 kb on - strand, within SM_b21597 at 1138.093 kb on - strand, within SM_b21597 at 1138.112 kb on - strand, within SM_b21597 at 1138.245 kb on - strand, within SM_b21597 at 1138.271 kb on + strand, within SM_b21597 at 1138.272 kb on - strand, within SM_b21597 at 1138.280 kb on + strand, within SM_b21597 at 1138.281 kb on - strand, within SM_b21597 at 1138.451 kb on + strand, within SM_b21597 at 1138.853 kb on + strand at 1138.853 kb on + strand at 1138.855 kb on + strand at 1138.881 kb on + strand at 1138.903 kb on + strand at 1138.904 kb on - strand at 1139.056 kb on + strand, within SM_b21598 at 1139.057 kb on - strand, within SM_b21598 at 1139.258 kb on - strand, within SM_b21598 at 1139.333 kb on + strand, within SM_b21598 at 1139.333 kb on + strand, within SM_b21598 at 1139.334 kb on - strand, within SM_b21598 at 1139.355 kb on + strand, within SM_b21598 at 1139.356 kb on - strand, within SM_b21598 at 1139.356 kb on - strand, within SM_b21598 at 1139.516 kb on - strand, within SM_b21598
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,136,662 + -0.3 1,136,662 + +0.3 1,136,666 + +0.8 1,136,667 - +0.4 1,136,834 + SM_b21596 0.10 -0.1 1,136,836 + SM_b21596 0.10 +0.2 1,136,836 + SM_b21596 0.10 -0.2 1,136,836 + SM_b21596 0.10 -0.4 1,136,837 - SM_b21596 0.10 -0.3 1,137,012 + SM_b21596 0.30 +0.6 1,137,029 - SM_b21596 0.32 +0.0 1,137,075 - SM_b21596 0.37 +0.2 1,137,075 - SM_b21596 0.37 +0.1 1,137,135 - SM_b21596 0.43 +0.7 1,137,275 + SM_b21596 0.59 -0.4 1,137,572 - -0.2 1,137,999 + SM_b21597 0.33 -0.3 1,138,060 - SM_b21597 0.39 -1.2 1,138,093 - SM_b21597 0.42 +0.5 1,138,112 - SM_b21597 0.44 -0.6 1,138,245 - SM_b21597 0.57 -0.4 1,138,271 + SM_b21597 0.59 -0.3 1,138,272 - SM_b21597 0.59 -1.6 1,138,280 + SM_b21597 0.60 -0.4 1,138,281 - SM_b21597 0.60 +0.1 1,138,451 + SM_b21597 0.77 -1.7 1,138,853 + -0.1 1,138,853 + +1.1 1,138,855 + +0.9 1,138,881 + +0.1 1,138,903 + +0.3 1,138,904 - -0.2 1,139,056 + SM_b21598 0.13 +0.3 1,139,057 - SM_b21598 0.13 -0.7 1,139,258 - SM_b21598 0.32 -0.2 1,139,333 + SM_b21598 0.39 +0.1 1,139,333 + SM_b21598 0.39 +0.7 1,139,334 - SM_b21598 0.39 -1.7 1,139,355 + SM_b21598 0.41 +0.3 1,139,356 - SM_b21598 0.41 +0.7 1,139,356 - SM_b21598 0.41 +1.7 1,139,516 - SM_b21598 0.56 -0.1
Or see this region's nucleotide sequence