Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21575 and SM_b21576 are separated by 1 nucleotides SM_b21576 and SM_b21577 are separated by 415 nucleotides SM_b21577 and SM_b21578 are separated by 283 nucleotides
SM_b21575: SM_b21575 - transporter, at 1,114,187 to 1,115,392
_b21575
SM_b21576: SM_b21576 - ArsR family transcriptional regulator, at 1,115,394 to 1,115,759
_b21576
SM_b21577: SM_b21577 - hypothetical protein, at 1,116,175 to 1,116,675
_b21577
SM_b21578: SM_b21578 - copper-transporting P-type ATPase, at 1,116,959 to 1,119,442
_b21578
Position (kb)
1116
1117 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1115.320 kb on - strand at 1115.320 kb on - strand at 1115.320 kb on - strand at 1115.392 kb on + strand at 1115.392 kb on + strand at 1115.393 kb on - strand at 1115.466 kb on + strand, within SM_b21576 at 1115.466 kb on + strand, within SM_b21576 at 1115.466 kb on + strand, within SM_b21576 at 1115.467 kb on - strand, within SM_b21576 at 1115.467 kb on - strand, within SM_b21576 at 1115.467 kb on - strand, within SM_b21576 at 1115.467 kb on - strand, within SM_b21576 at 1115.467 kb on - strand, within SM_b21576 at 1115.531 kb on - strand, within SM_b21576 at 1115.543 kb on - strand, within SM_b21576 at 1115.543 kb on - strand, within SM_b21576 at 1115.920 kb on + strand at 1115.930 kb on + strand at 1115.930 kb on + strand at 1115.930 kb on + strand at 1115.930 kb on + strand at 1115.930 kb on + strand at 1115.931 kb on - strand at 1115.957 kb on + strand at 1115.958 kb on - strand at 1116.177 kb on - strand at 1116.295 kb on + strand, within SM_b21577 at 1116.372 kb on + strand, within SM_b21577 at 1116.373 kb on - strand, within SM_b21577 at 1116.373 kb on - strand, within SM_b21577 at 1116.516 kb on - strand, within SM_b21577 at 1116.516 kb on - strand, within SM_b21577 at 1116.516 kb on - strand, within SM_b21577 at 1116.516 kb on - strand, within SM_b21577 at 1116.748 kb on + strand at 1116.748 kb on + strand at 1116.848 kb on + strand at 1116.915 kb on - strand at 1117.188 kb on - strand at 1117.304 kb on - strand, within SM_b21578 at 1117.391 kb on + strand, within SM_b21578 at 1117.392 kb on - strand, within SM_b21578 at 1117.592 kb on + strand, within SM_b21578 at 1117.593 kb on - strand, within SM_b21578 at 1117.593 kb on - strand, within SM_b21578 at 1117.597 kb on - strand, within SM_b21578
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,115,320 - -0.6 1,115,320 - +0.7 1,115,320 - -2.0 1,115,392 + -0.4 1,115,392 + -0.1 1,115,393 - +0.5 1,115,466 + SM_b21576 0.20 +0.8 1,115,466 + SM_b21576 0.20 -0.3 1,115,466 + SM_b21576 0.20 +0.0 1,115,467 - SM_b21576 0.20 -0.3 1,115,467 - SM_b21576 0.20 +0.4 1,115,467 - SM_b21576 0.20 +0.1 1,115,467 - SM_b21576 0.20 -2.5 1,115,467 - SM_b21576 0.20 -0.6 1,115,531 - SM_b21576 0.37 +1.3 1,115,543 - SM_b21576 0.41 -0.3 1,115,543 - SM_b21576 0.41 +0.3 1,115,920 + -1.4 1,115,930 + +1.2 1,115,930 + +0.2 1,115,930 + -0.6 1,115,930 + +0.7 1,115,930 + +0.6 1,115,931 - -0.8 1,115,957 + +0.7 1,115,958 - -0.6 1,116,177 - -0.6 1,116,295 + SM_b21577 0.24 -0.5 1,116,372 + SM_b21577 0.39 -1.1 1,116,373 - SM_b21577 0.40 +0.2 1,116,373 - SM_b21577 0.40 +0.2 1,116,516 - SM_b21577 0.68 -0.3 1,116,516 - SM_b21577 0.68 -1.0 1,116,516 - SM_b21577 0.68 -1.5 1,116,516 - SM_b21577 0.68 -1.9 1,116,748 + -0.2 1,116,748 + +2.3 1,116,848 + +0.7 1,116,915 - +2.3 1,117,188 - +0.1 1,117,304 - SM_b21578 0.14 +0.4 1,117,391 + SM_b21578 0.17 -0.6 1,117,392 - SM_b21578 0.17 -0.2 1,117,592 + SM_b21578 0.25 +0.3 1,117,593 - SM_b21578 0.26 +0.5 1,117,593 - SM_b21578 0.26 -0.9 1,117,597 - SM_b21578 0.26 -0.5
Or see this region's nucleotide sequence