Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21480 and SM_b21481 overlap by 7 nucleotides SM_b21481 and SM_b21482 are separated by 296 nucleotides SM_b21482 and SM_b21483 are separated by 92 nucleotides SM_b21483 and SM_b21686 are separated by 16 nucleotides SM_b21686 and SM_b21484 are separated by 38 nucleotides
SM_b21480: SM_b21480 - hypothetical protein, at 1,403,374 to 1,403,634
_b21480
SM_b21481: SM_b21481 - hypothetical protein, at 1,403,628 to 1,404,104
_b21481
SM_b21482: SM_b21482 - hypothetical protein, at 1,404,401 to 1,404,703
_b21482
SM_b21483: SM_b21483 - hypothetical protein, at 1,404,796 to 1,405,077
_b21483
SM_b21686: SM_b21686 - hypothetical protein, at 1,405,094 to 1,405,279
_b21686
SM_b21484: SM_b21484 - RNA polymerase sigma-E factor (sigma-24) protein, at 1,405,318 to 1,405,839
_b21484
Position (kb)
1404
1405 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1403.422 kb on - strand, within SM_b21480 at 1403.919 kb on + strand, within SM_b21481 at 1403.919 kb on + strand, within SM_b21481 at 1403.919 kb on + strand, within SM_b21481 at 1403.919 kb on + strand, within SM_b21481 at 1403.919 kb on + strand, within SM_b21481 at 1403.920 kb on - strand, within SM_b21481 at 1403.920 kb on - strand, within SM_b21481 at 1403.920 kb on - strand, within SM_b21481 at 1403.920 kb on - strand, within SM_b21481 at 1403.920 kb on - strand, within SM_b21481 at 1403.920 kb on - strand, within SM_b21481 at 1403.920 kb on - strand, within SM_b21481 at 1404.026 kb on + strand, within SM_b21481 at 1404.063 kb on + strand at 1404.063 kb on + strand at 1404.064 kb on - strand at 1404.064 kb on - strand at 1404.094 kb on + strand at 1404.095 kb on - strand at 1404.195 kb on + strand at 1404.195 kb on + strand at 1404.196 kb on - strand at 1404.297 kb on + strand at 1404.298 kb on - strand at 1404.298 kb on - strand at 1404.352 kb on - strand at 1404.364 kb on + strand at 1404.602 kb on + strand, within SM_b21482 at 1404.603 kb on - strand, within SM_b21482 at 1404.722 kb on - strand at 1404.722 kb on - strand at 1404.765 kb on - strand at 1404.765 kb on - strand at 1404.849 kb on + strand, within SM_b21483 at 1404.866 kb on + strand, within SM_b21483 at 1404.866 kb on + strand, within SM_b21483 at 1404.867 kb on - strand, within SM_b21483 at 1404.948 kb on - strand, within SM_b21483 at 1404.948 kb on - strand, within SM_b21483 at 1404.948 kb on - strand, within SM_b21483 at 1404.954 kb on + strand, within SM_b21483 at 1404.955 kb on - strand, within SM_b21483 at 1404.976 kb on + strand, within SM_b21483 at 1404.976 kb on + strand, within SM_b21483 at 1404.977 kb on - strand, within SM_b21483 at 1404.977 kb on - strand, within SM_b21483 at 1404.980 kb on + strand, within SM_b21483 at 1404.980 kb on + strand, within SM_b21483 at 1404.988 kb on + strand, within SM_b21483 at 1404.989 kb on - strand, within SM_b21483 at 1404.989 kb on - strand, within SM_b21483 at 1405.059 kb on + strand at 1405.059 kb on + strand at 1405.172 kb on + strand, within SM_b21686 at 1405.173 kb on - strand, within SM_b21686 at 1405.192 kb on + strand, within SM_b21686 at 1405.193 kb on - strand, within SM_b21686 at 1405.296 kb on - strand at 1405.296 kb on - strand at 1405.311 kb on - strand at 1405.555 kb on + strand, within SM_b21484 at 1405.556 kb on - strand, within SM_b21484 at 1405.556 kb on - strand, within SM_b21484 at 1405.556 kb on - strand, within SM_b21484 at 1405.556 kb on - strand, within SM_b21484 at 1405.556 kb on - strand, within SM_b21484 at 1405.655 kb on + strand, within SM_b21484 at 1405.656 kb on - strand, within SM_b21484 at 1405.656 kb on - strand, within SM_b21484
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,403,422 - SM_b21480 0.18 +0.4 1,403,919 + SM_b21481 0.61 -0.5 1,403,919 + SM_b21481 0.61 -1.0 1,403,919 + SM_b21481 0.61 -0.1 1,403,919 + SM_b21481 0.61 -0.1 1,403,919 + SM_b21481 0.61 -0.1 1,403,920 - SM_b21481 0.61 +1.2 1,403,920 - SM_b21481 0.61 -2.0 1,403,920 - SM_b21481 0.61 +2.0 1,403,920 - SM_b21481 0.61 +0.6 1,403,920 - SM_b21481 0.61 -0.3 1,403,920 - SM_b21481 0.61 +0.1 1,403,920 - SM_b21481 0.61 +0.3 1,404,026 + SM_b21481 0.83 +0.2 1,404,063 + -0.7 1,404,063 + +0.0 1,404,064 - -1.2 1,404,064 - -0.1 1,404,094 + -0.4 1,404,095 - -0.2 1,404,195 + +0.1 1,404,195 + -0.4 1,404,196 - +0.4 1,404,297 + -1.0 1,404,298 - +0.7 1,404,298 - -0.6 1,404,352 - -1.1 1,404,364 + -0.6 1,404,602 + SM_b21482 0.66 +0.5 1,404,603 - SM_b21482 0.67 -1.0 1,404,722 - +0.2 1,404,722 - -0.4 1,404,765 - -0.2 1,404,765 - -0.1 1,404,849 + SM_b21483 0.19 +0.0 1,404,866 + SM_b21483 0.25 -0.6 1,404,866 + SM_b21483 0.25 -0.8 1,404,867 - SM_b21483 0.25 +0.2 1,404,948 - SM_b21483 0.54 +0.1 1,404,948 - SM_b21483 0.54 -0.1 1,404,948 - SM_b21483 0.54 -0.4 1,404,954 + SM_b21483 0.56 +0.2 1,404,955 - SM_b21483 0.56 -0.4 1,404,976 + SM_b21483 0.64 -0.4 1,404,976 + SM_b21483 0.64 +0.2 1,404,977 - SM_b21483 0.64 -0.4 1,404,977 - SM_b21483 0.64 +0.1 1,404,980 + SM_b21483 0.65 -0.1 1,404,980 + SM_b21483 0.65 +0.2 1,404,988 + SM_b21483 0.68 +0.1 1,404,989 - SM_b21483 0.68 +1.4 1,404,989 - SM_b21483 0.68 -1.1 1,405,059 + -0.0 1,405,059 + -0.5 1,405,172 + SM_b21686 0.42 -0.3 1,405,173 - SM_b21686 0.42 -1.0 1,405,192 + SM_b21686 0.53 -1.2 1,405,193 - SM_b21686 0.53 -0.4 1,405,296 - -0.5 1,405,296 - +0.2 1,405,311 - -0.1 1,405,555 + SM_b21484 0.45 -0.6 1,405,556 - SM_b21484 0.46 -0.3 1,405,556 - SM_b21484 0.46 +0.6 1,405,556 - SM_b21484 0.46 -0.5 1,405,556 - SM_b21484 0.46 +1.2 1,405,556 - SM_b21484 0.46 -0.2 1,405,655 + SM_b21484 0.65 +0.6 1,405,656 - SM_b21484 0.65 +0.1 1,405,656 - SM_b21484 0.65 -0.7
Or see this region's nucleotide sequence