Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21482

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21480 and SM_b21481 overlap by 7 nucleotidesSM_b21481 and SM_b21482 are separated by 296 nucleotidesSM_b21482 and SM_b21483 are separated by 92 nucleotidesSM_b21483 and SM_b21686 are separated by 16 nucleotidesSM_b21686 and SM_b21484 are separated by 38 nucleotides SM_b21480: SM_b21480 - hypothetical protein, at 1,403,374 to 1,403,634 _b21480 SM_b21481: SM_b21481 - hypothetical protein, at 1,403,628 to 1,404,104 _b21481 SM_b21482: SM_b21482 - hypothetical protein, at 1,404,401 to 1,404,703 _b21482 SM_b21483: SM_b21483 - hypothetical protein, at 1,404,796 to 1,405,077 _b21483 SM_b21686: SM_b21686 - hypothetical protein, at 1,405,094 to 1,405,279 _b21686 SM_b21484: SM_b21484 - RNA polymerase sigma-E factor (sigma-24) protein, at 1,405,318 to 1,405,839 _b21484 Position (kb) 1404 1405Strain fitness (log2 ratio) -2 -1 0 1 2at 1403.422 kb on - strand, within SM_b21480at 1403.919 kb on + strand, within SM_b21481at 1403.919 kb on + strand, within SM_b21481at 1403.919 kb on + strand, within SM_b21481at 1403.919 kb on + strand, within SM_b21481at 1403.919 kb on + strand, within SM_b21481at 1403.920 kb on - strand, within SM_b21481at 1403.920 kb on - strand, within SM_b21481at 1403.920 kb on - strand, within SM_b21481at 1403.920 kb on - strand, within SM_b21481at 1403.920 kb on - strand, within SM_b21481at 1403.920 kb on - strand, within SM_b21481at 1403.920 kb on - strand, within SM_b21481at 1404.026 kb on + strand, within SM_b21481at 1404.063 kb on + strandat 1404.063 kb on + strandat 1404.064 kb on - strandat 1404.064 kb on - strandat 1404.094 kb on + strandat 1404.095 kb on - strandat 1404.195 kb on + strandat 1404.195 kb on + strandat 1404.196 kb on - strandat 1404.297 kb on + strandat 1404.298 kb on - strandat 1404.298 kb on - strandat 1404.352 kb on - strandat 1404.364 kb on + strandat 1404.602 kb on + strand, within SM_b21482at 1404.603 kb on - strand, within SM_b21482at 1404.722 kb on - strandat 1404.722 kb on - strandat 1404.765 kb on - strandat 1404.765 kb on - strandat 1404.849 kb on + strand, within SM_b21483at 1404.866 kb on + strand, within SM_b21483at 1404.866 kb on + strand, within SM_b21483at 1404.867 kb on - strand, within SM_b21483at 1404.948 kb on - strand, within SM_b21483at 1404.948 kb on - strand, within SM_b21483at 1404.948 kb on - strand, within SM_b21483at 1404.954 kb on + strand, within SM_b21483at 1404.955 kb on - strand, within SM_b21483at 1404.976 kb on + strand, within SM_b21483at 1404.976 kb on + strand, within SM_b21483at 1404.977 kb on - strand, within SM_b21483at 1404.977 kb on - strand, within SM_b21483at 1404.980 kb on + strand, within SM_b21483at 1404.980 kb on + strand, within SM_b21483at 1404.988 kb on + strand, within SM_b21483at 1404.989 kb on - strand, within SM_b21483at 1404.989 kb on - strand, within SM_b21483at 1405.059 kb on + strandat 1405.059 kb on + strandat 1405.172 kb on + strand, within SM_b21686at 1405.173 kb on - strand, within SM_b21686at 1405.192 kb on + strand, within SM_b21686at 1405.193 kb on - strand, within SM_b21686at 1405.296 kb on - strandat 1405.296 kb on - strandat 1405.311 kb on - strandat 1405.555 kb on + strand, within SM_b21484at 1405.556 kb on - strand, within SM_b21484at 1405.556 kb on - strand, within SM_b21484at 1405.556 kb on - strand, within SM_b21484at 1405.556 kb on - strand, within SM_b21484at 1405.556 kb on - strand, within SM_b21484at 1405.655 kb on + strand, within SM_b21484at 1405.656 kb on - strand, within SM_b21484at 1405.656 kb on - strand, within SM_b21484

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,403,422 - SM_b21480 0.18 +0.4
1,403,919 + SM_b21481 0.61 -0.5
1,403,919 + SM_b21481 0.61 -1.0
1,403,919 + SM_b21481 0.61 -0.1
1,403,919 + SM_b21481 0.61 -0.1
1,403,919 + SM_b21481 0.61 -0.1
1,403,920 - SM_b21481 0.61 +1.2
1,403,920 - SM_b21481 0.61 -2.0
1,403,920 - SM_b21481 0.61 +2.0
1,403,920 - SM_b21481 0.61 +0.6
1,403,920 - SM_b21481 0.61 -0.3
1,403,920 - SM_b21481 0.61 +0.1
1,403,920 - SM_b21481 0.61 +0.3
1,404,026 + SM_b21481 0.83 +0.2
1,404,063 + -0.7
1,404,063 + +0.0
1,404,064 - -1.2
1,404,064 - -0.1
1,404,094 + -0.4
1,404,095 - -0.2
1,404,195 + +0.1
1,404,195 + -0.4
1,404,196 - +0.4
1,404,297 + -1.0
1,404,298 - +0.7
1,404,298 - -0.6
1,404,352 - -1.1
1,404,364 + -0.6
1,404,602 + SM_b21482 0.66 +0.5
1,404,603 - SM_b21482 0.67 -1.0
1,404,722 - +0.2
1,404,722 - -0.4
1,404,765 - -0.2
1,404,765 - -0.1
1,404,849 + SM_b21483 0.19 +0.0
1,404,866 + SM_b21483 0.25 -0.6
1,404,866 + SM_b21483 0.25 -0.8
1,404,867 - SM_b21483 0.25 +0.2
1,404,948 - SM_b21483 0.54 +0.1
1,404,948 - SM_b21483 0.54 -0.1
1,404,948 - SM_b21483 0.54 -0.4
1,404,954 + SM_b21483 0.56 +0.2
1,404,955 - SM_b21483 0.56 -0.4
1,404,976 + SM_b21483 0.64 -0.4
1,404,976 + SM_b21483 0.64 +0.2
1,404,977 - SM_b21483 0.64 -0.4
1,404,977 - SM_b21483 0.64 +0.1
1,404,980 + SM_b21483 0.65 -0.1
1,404,980 + SM_b21483 0.65 +0.2
1,404,988 + SM_b21483 0.68 +0.1
1,404,989 - SM_b21483 0.68 +1.4
1,404,989 - SM_b21483 0.68 -1.1
1,405,059 + -0.0
1,405,059 + -0.5
1,405,172 + SM_b21686 0.42 -0.3
1,405,173 - SM_b21686 0.42 -1.0
1,405,192 + SM_b21686 0.53 -1.2
1,405,193 - SM_b21686 0.53 -0.4
1,405,296 - -0.5
1,405,296 - +0.2
1,405,311 - -0.1
1,405,555 + SM_b21484 0.45 -0.6
1,405,556 - SM_b21484 0.46 -0.3
1,405,556 - SM_b21484 0.46 +0.6
1,405,556 - SM_b21484 0.46 -0.5
1,405,556 - SM_b21484 0.46 +1.2
1,405,556 - SM_b21484 0.46 -0.2
1,405,655 + SM_b21484 0.65 +0.6
1,405,656 - SM_b21484 0.65 +0.1
1,405,656 - SM_b21484 0.65 -0.7

Or see this region's nucleotide sequence