Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21463 and SM_b21464 are separated by 213 nucleotides SM_b21464 and SM_b21465 are separated by 100 nucleotides
SM_b21463: SM_b21463 - glycosyl hydrolase, 6-phospho-beta-glucosidase, at 1,389,575 to 1,390,960
_b21463
SM_b21464: SM_b21464 - GntR family transcriptional regulator, at 1,391,174 to 1,391,947
_b21464
SM_b21465: SM_b21465 - HlyD family protein secretion protein, at 1,392,048 to 1,393,367
_b21465
Position (kb)
1391
1392 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1390.215 kb on + strand, within SM_b21463 at 1390.218 kb on + strand, within SM_b21463 at 1390.218 kb on + strand, within SM_b21463 at 1390.219 kb on - strand, within SM_b21463 at 1390.221 kb on + strand, within SM_b21463 at 1390.221 kb on + strand, within SM_b21463 at 1390.221 kb on + strand, within SM_b21463 at 1390.221 kb on + strand, within SM_b21463 at 1390.222 kb on - strand, within SM_b21463 at 1390.224 kb on + strand, within SM_b21463 at 1390.224 kb on + strand, within SM_b21463 at 1390.224 kb on + strand, within SM_b21463 at 1390.224 kb on + strand, within SM_b21463 at 1390.225 kb on - strand, within SM_b21463 at 1390.225 kb on - strand, within SM_b21463 at 1390.227 kb on + strand, within SM_b21463 at 1390.228 kb on - strand, within SM_b21463 at 1390.228 kb on - strand, within SM_b21463 at 1390.234 kb on - strand, within SM_b21463 at 1390.234 kb on - strand, within SM_b21463 at 1390.366 kb on + strand, within SM_b21463 at 1390.367 kb on - strand, within SM_b21463 at 1390.389 kb on + strand, within SM_b21463 at 1390.390 kb on - strand, within SM_b21463 at 1390.489 kb on - strand, within SM_b21463 at 1390.584 kb on + strand, within SM_b21463 at 1390.690 kb on + strand, within SM_b21463 at 1390.691 kb on - strand, within SM_b21463 at 1390.732 kb on - strand, within SM_b21463 at 1390.817 kb on + strand, within SM_b21463 at 1390.817 kb on + strand, within SM_b21463 at 1390.817 kb on + strand, within SM_b21463 at 1390.818 kb on - strand, within SM_b21463 at 1390.818 kb on - strand, within SM_b21463 at 1390.819 kb on + strand, within SM_b21463 at 1390.819 kb on + strand, within SM_b21463 at 1390.965 kb on + strand at 1391.237 kb on + strand at 1391.299 kb on + strand, within SM_b21464 at 1391.300 kb on - strand, within SM_b21464 at 1391.333 kb on + strand, within SM_b21464 at 1391.420 kb on + strand, within SM_b21464 at 1391.421 kb on - strand, within SM_b21464 at 1391.421 kb on - strand, within SM_b21464 at 1391.470 kb on + strand, within SM_b21464 at 1391.622 kb on + strand, within SM_b21464 at 1391.712 kb on - strand, within SM_b21464 at 1391.733 kb on - strand, within SM_b21464 at 1391.778 kb on + strand, within SM_b21464 at 1391.779 kb on - strand, within SM_b21464 at 1391.945 kb on + strand at 1391.945 kb on + strand at 1391.967 kb on + strand at 1391.992 kb on + strand at 1391.993 kb on - strand at 1391.993 kb on - strand at 1391.993 kb on - strand at 1392.027 kb on - strand at 1392.027 kb on - strand at 1392.029 kb on + strand at 1392.157 kb on + strand at 1392.220 kb on + strand, within SM_b21465 at 1392.220 kb on + strand, within SM_b21465 at 1392.220 kb on + strand, within SM_b21465 at 1392.221 kb on - strand, within SM_b21465 at 1392.370 kb on - strand, within SM_b21465 at 1392.370 kb on - strand, within SM_b21465 at 1392.452 kb on + strand, within SM_b21465 at 1392.452 kb on + strand, within SM_b21465 at 1392.545 kb on - strand, within SM_b21465 at 1392.545 kb on - strand, within SM_b21465 at 1392.822 kb on + strand, within SM_b21465 at 1392.823 kb on - strand, within SM_b21465 at 1392.823 kb on - strand, within SM_b21465 at 1392.933 kb on + strand, within SM_b21465
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,390,215 + SM_b21463 0.46 +1.0 1,390,218 + SM_b21463 0.46 -0.2 1,390,218 + SM_b21463 0.46 +0.7 1,390,219 - SM_b21463 0.46 -0.1 1,390,221 + SM_b21463 0.47 +0.6 1,390,221 + SM_b21463 0.47 -0.7 1,390,221 + SM_b21463 0.47 +0.2 1,390,221 + SM_b21463 0.47 +3.0 1,390,222 - SM_b21463 0.47 +0.0 1,390,224 + SM_b21463 0.47 +0.1 1,390,224 + SM_b21463 0.47 -0.3 1,390,224 + SM_b21463 0.47 +0.1 1,390,224 + SM_b21463 0.47 +0.1 1,390,225 - SM_b21463 0.47 +0.2 1,390,225 - SM_b21463 0.47 +0.3 1,390,227 + SM_b21463 0.47 -0.1 1,390,228 - SM_b21463 0.47 -0.5 1,390,228 - SM_b21463 0.47 +1.7 1,390,234 - SM_b21463 0.48 -0.1 1,390,234 - SM_b21463 0.48 +0.7 1,390,366 + SM_b21463 0.57 +0.3 1,390,367 - SM_b21463 0.57 -0.8 1,390,389 + SM_b21463 0.59 +0.4 1,390,390 - SM_b21463 0.59 -0.2 1,390,489 - SM_b21463 0.66 +0.3 1,390,584 + SM_b21463 0.73 -0.2 1,390,690 + SM_b21463 0.80 +0.7 1,390,691 - SM_b21463 0.81 -0.3 1,390,732 - SM_b21463 0.83 -1.3 1,390,817 + SM_b21463 0.90 -0.4 1,390,817 + SM_b21463 0.90 +0.5 1,390,817 + SM_b21463 0.90 -0.1 1,390,818 - SM_b21463 0.90 +1.6 1,390,818 - SM_b21463 0.90 -0.2 1,390,819 + SM_b21463 0.90 -0.1 1,390,819 + SM_b21463 0.90 +0.3 1,390,965 + -1.3 1,391,237 + -1.1 1,391,299 + SM_b21464 0.16 -0.7 1,391,300 - SM_b21464 0.16 +0.7 1,391,333 + SM_b21464 0.21 -0.8 1,391,420 + SM_b21464 0.32 +0.3 1,391,421 - SM_b21464 0.32 +0.0 1,391,421 - SM_b21464 0.32 -1.0 1,391,470 + SM_b21464 0.38 -0.3 1,391,622 + SM_b21464 0.58 +0.6 1,391,712 - SM_b21464 0.70 +0.1 1,391,733 - SM_b21464 0.72 +1.0 1,391,778 + SM_b21464 0.78 -0.1 1,391,779 - SM_b21464 0.78 +0.0 1,391,945 + -0.3 1,391,945 + +0.9 1,391,967 + +0.3 1,391,992 + -1.0 1,391,993 - -0.3 1,391,993 - +0.5 1,391,993 - -0.4 1,392,027 - -1.3 1,392,027 - -0.9 1,392,029 + -0.2 1,392,157 + +0.6 1,392,220 + SM_b21465 0.13 -0.3 1,392,220 + SM_b21465 0.13 +1.3 1,392,220 + SM_b21465 0.13 -1.4 1,392,221 - SM_b21465 0.13 -0.4 1,392,370 - SM_b21465 0.24 -0.5 1,392,370 - SM_b21465 0.24 +0.0 1,392,452 + SM_b21465 0.31 +0.3 1,392,452 + SM_b21465 0.31 +0.1 1,392,545 - SM_b21465 0.38 +2.3 1,392,545 - SM_b21465 0.38 -0.7 1,392,822 + SM_b21465 0.59 +0.2 1,392,823 - SM_b21465 0.59 +0.2 1,392,823 - SM_b21465 0.59 +0.9 1,392,933 + SM_b21465 0.67 -0.4
Or see this region's nucleotide sequence