Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21459

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21458 and SM_b21459 are separated by 11 nucleotidesSM_b21459 and SM_b21460 overlap by 4 nucleotides SM_b21458: SM_b21458 - sugar uptake ABC transporter permease, at 1,384,373 to 1,385,248 _b21458 SM_b21459: SM_b21459 - sugar uptake ABC transporter permease, at 1,385,260 to 1,386,153 _b21459 SM_b21460: SM_b21460 - sugar uptake ABC transporter ATP-binding protein, at 1,386,150 to 1,387,262 _b21460 Position (kb) 1385 1386 1387Strain fitness (log2 ratio) -1 0 1at 1384.276 kb on + strandat 1384.326 kb on + strandat 1384.327 kb on - strandat 1384.753 kb on + strand, within SM_b21458at 1384.753 kb on + strand, within SM_b21458at 1384.754 kb on - strand, within SM_b21458at 1384.777 kb on - strand, within SM_b21458at 1384.806 kb on + strand, within SM_b21458at 1384.806 kb on + strand, within SM_b21458at 1384.933 kb on - strand, within SM_b21458at 1385.122 kb on - strand, within SM_b21458at 1385.139 kb on + strand, within SM_b21458at 1385.139 kb on + strand, within SM_b21458at 1385.140 kb on - strand, within SM_b21458at 1385.183 kb on + strandat 1385.183 kb on + strandat 1385.203 kb on - strandat 1385.394 kb on - strand, within SM_b21459at 1385.438 kb on + strand, within SM_b21459at 1385.439 kb on - strand, within SM_b21459at 1385.521 kb on + strand, within SM_b21459at 1385.906 kb on - strand, within SM_b21459at 1386.103 kb on + strandat 1386.104 kb on - strandat 1386.104 kb on - strandat 1386.223 kb on + strandat 1386.223 kb on + strandat 1386.224 kb on - strandat 1386.270 kb on + strand, within SM_b21460at 1386.270 kb on + strand, within SM_b21460at 1386.271 kb on - strand, within SM_b21460at 1386.271 kb on - strand, within SM_b21460at 1386.271 kb on - strand, within SM_b21460at 1386.271 kb on - strand, within SM_b21460at 1386.331 kb on + strand, within SM_b21460at 1386.331 kb on + strand, within SM_b21460at 1386.332 kb on - strand, within SM_b21460at 1386.340 kb on + strand, within SM_b21460at 1386.340 kb on + strand, within SM_b21460at 1386.340 kb on + strand, within SM_b21460at 1386.340 kb on + strand, within SM_b21460at 1386.340 kb on + strand, within SM_b21460at 1386.341 kb on - strandat 1386.341 kb on - strand, within SM_b21460at 1386.341 kb on - strand, within SM_b21460at 1386.341 kb on - strand, within SM_b21460at 1386.341 kb on - strand, within SM_b21460at 1386.341 kb on - strand, within SM_b21460at 1386.347 kb on - strand, within SM_b21460at 1386.347 kb on - strand, within SM_b21460at 1386.467 kb on - strand, within SM_b21460at 1386.509 kb on + strand, within SM_b21460at 1386.509 kb on + strand, within SM_b21460at 1386.551 kb on + strand, within SM_b21460at 1386.551 kb on + strand, within SM_b21460at 1386.552 kb on - strand, within SM_b21460at 1386.552 kb on - strand, within SM_b21460at 1386.552 kb on - strand, within SM_b21460at 1386.599 kb on - strandat 1386.599 kb on - strand, within SM_b21460at 1386.697 kb on + strand, within SM_b21460at 1386.697 kb on + strand, within SM_b21460at 1386.697 kb on + strand, within SM_b21460at 1386.697 kb on + strand, within SM_b21460at 1386.697 kb on + strand, within SM_b21460at 1386.698 kb on - strand, within SM_b21460at 1386.698 kb on - strand, within SM_b21460at 1386.698 kb on - strand, within SM_b21460at 1386.698 kb on - strand, within SM_b21460at 1386.995 kb on + strand, within SM_b21460

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,384,276 + +0.2
1,384,326 + -1.2
1,384,327 - +0.1
1,384,753 + SM_b21458 0.43 +0.3
1,384,753 + SM_b21458 0.43 +0.0
1,384,754 - SM_b21458 0.43 +1.6
1,384,777 - SM_b21458 0.46 -0.3
1,384,806 + SM_b21458 0.49 +1.0
1,384,806 + SM_b21458 0.49 -0.0
1,384,933 - SM_b21458 0.64 -0.0
1,385,122 - SM_b21458 0.86 -1.3
1,385,139 + SM_b21458 0.87 +0.3
1,385,139 + SM_b21458 0.87 -0.6
1,385,140 - SM_b21458 0.88 -0.0
1,385,183 + +0.6
1,385,183 + -0.3
1,385,203 - +1.7
1,385,394 - SM_b21459 0.15 -0.4
1,385,438 + SM_b21459 0.20 -0.7
1,385,439 - SM_b21459 0.20 +0.0
1,385,521 + SM_b21459 0.29 -0.9
1,385,906 - SM_b21459 0.72 +1.0
1,386,103 + +1.2
1,386,104 - +0.2
1,386,104 - +0.1
1,386,223 + -0.3
1,386,223 + -0.3
1,386,224 - -0.7
1,386,270 + SM_b21460 0.11 -0.7
1,386,270 + SM_b21460 0.11 -0.1
1,386,271 - SM_b21460 0.11 -0.1
1,386,271 - SM_b21460 0.11 +0.8
1,386,271 - SM_b21460 0.11 -0.2
1,386,271 - SM_b21460 0.11 +0.1
1,386,331 + SM_b21460 0.16 +0.1
1,386,331 + SM_b21460 0.16 +1.1
1,386,332 - SM_b21460 0.16 +0.5
1,386,340 + SM_b21460 0.17 -0.0
1,386,340 + SM_b21460 0.17 -0.5
1,386,340 + SM_b21460 0.17 +0.3
1,386,340 + SM_b21460 0.17 -0.2
1,386,340 + SM_b21460 0.17 +0.3
1,386,341 - +0.8
1,386,341 - SM_b21460 0.17 -0.5
1,386,341 - SM_b21460 0.17 +0.5
1,386,341 - SM_b21460 0.17 +0.8
1,386,341 - SM_b21460 0.17 -0.4
1,386,341 - SM_b21460 0.17 -0.8
1,386,347 - SM_b21460 0.18 +0.4
1,386,347 - SM_b21460 0.18 -0.5
1,386,467 - SM_b21460 0.28 -0.2
1,386,509 + SM_b21460 0.32 -0.0
1,386,509 + SM_b21460 0.32 +0.0
1,386,551 + SM_b21460 0.36 -1.5
1,386,551 + SM_b21460 0.36 +0.6
1,386,552 - SM_b21460 0.36 -0.1
1,386,552 - SM_b21460 0.36 +0.6
1,386,552 - SM_b21460 0.36 +0.2
1,386,599 - +1.0
1,386,599 - SM_b21460 0.40 -0.2
1,386,697 + SM_b21460 0.49 +0.0
1,386,697 + SM_b21460 0.49 +0.0
1,386,697 + SM_b21460 0.49 +0.8
1,386,697 + SM_b21460 0.49 -0.4
1,386,697 + SM_b21460 0.49 +1.5
1,386,698 - SM_b21460 0.49 -0.8
1,386,698 - SM_b21460 0.49 +0.5
1,386,698 - SM_b21460 0.49 +0.9
1,386,698 - SM_b21460 0.49 -0.8
1,386,995 + SM_b21460 0.76 -0.3

Or see this region's nucleotide sequence