Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21351 and SM_b21352 are separated by 4 nucleotides SM_b21352 and SM_b21353 are separated by 154 nucleotides SM_b21353 and SM_b21354 are separated by 30 nucleotides
SM_b21351: SM_b21351 - C4-dicarboxylate large membrane transport protein, at 1,016,547 to 1,017,830
_b21351
SM_b21352: SM_b21352 - C4-dicarboxylate small membrane transport protein, at 1,017,835 to 1,018,332
_b21352
SM_b21353: SM_b21353 - periplasmic C4-dicarboxylate transport protein, at 1,018,487 to 1,019,464
_b21353
SM_b21354: SM_b21354 - glucuronate isomerase, at 1,019,495 to 1,020,904
_b21354
Position (kb)
1018
1019
1020 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1017.643 kb on + strand, within SM_b21351 at 1017.643 kb on + strand, within SM_b21351 at 1017.644 kb on - strand, within SM_b21351 at 1017.731 kb on - strand at 1017.845 kb on - strand at 1017.845 kb on - strand at 1017.989 kb on + strand, within SM_b21352 at 1017.989 kb on + strand, within SM_b21352 at 1018.145 kb on + strand, within SM_b21352 at 1018.145 kb on + strand, within SM_b21352 at 1018.146 kb on - strand, within SM_b21352 at 1018.146 kb on - strand, within SM_b21352 at 1018.146 kb on - strand, within SM_b21352 at 1018.146 kb on - strand, within SM_b21352 at 1018.172 kb on + strand, within SM_b21352 at 1018.173 kb on - strand, within SM_b21352 at 1018.173 kb on - strand, within SM_b21352 at 1018.448 kb on + strand at 1018.503 kb on - strand at 1018.551 kb on + strand at 1018.754 kb on + strand, within SM_b21353 at 1018.754 kb on + strand, within SM_b21353 at 1018.755 kb on - strand, within SM_b21353 at 1018.789 kb on - strand, within SM_b21353 at 1018.789 kb on - strand, within SM_b21353 at 1018.789 kb on - strand, within SM_b21353 at 1018.799 kb on + strand, within SM_b21353 at 1018.799 kb on + strand, within SM_b21353 at 1018.825 kb on - strand, within SM_b21353 at 1018.825 kb on - strand, within SM_b21353 at 1018.878 kb on + strand, within SM_b21353 at 1018.879 kb on - strand, within SM_b21353 at 1018.879 kb on - strand, within SM_b21353 at 1018.991 kb on - strand, within SM_b21353 at 1019.013 kb on + strand, within SM_b21353 at 1019.014 kb on - strand, within SM_b21353 at 1019.014 kb on - strand, within SM_b21353 at 1019.038 kb on - strand, within SM_b21353 at 1019.038 kb on - strand, within SM_b21353 at 1019.038 kb on - strand, within SM_b21353 at 1019.038 kb on - strand, within SM_b21353 at 1019.038 kb on - strand, within SM_b21353 at 1019.274 kb on + strand, within SM_b21353 at 1019.527 kb on - strand at 1019.527 kb on - strand at 1019.527 kb on - strand at 1019.550 kb on + strand at 1019.782 kb on - strand, within SM_b21354 at 1019.814 kb on + strand, within SM_b21354 at 1019.814 kb on + strand, within SM_b21354 at 1019.815 kb on - strand, within SM_b21354 at 1019.815 kb on - strand, within SM_b21354 at 1019.815 kb on - strand, within SM_b21354 at 1019.901 kb on + strand, within SM_b21354 at 1019.902 kb on - strand, within SM_b21354 at 1019.902 kb on - strand, within SM_b21354 at 1019.921 kb on - strand, within SM_b21354 at 1019.999 kb on + strand, within SM_b21354 at 1020.324 kb on + strand, within SM_b21354
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,017,643 + SM_b21351 0.85 -2.2 1,017,643 + SM_b21351 0.85 +0.5 1,017,644 - SM_b21351 0.85 -0.4 1,017,731 - -0.0 1,017,845 - -0.5 1,017,845 - -0.1 1,017,989 + SM_b21352 0.31 +0.1 1,017,989 + SM_b21352 0.31 +2.3 1,018,145 + SM_b21352 0.62 +0.1 1,018,145 + SM_b21352 0.62 +0.9 1,018,146 - SM_b21352 0.62 -0.4 1,018,146 - SM_b21352 0.62 +0.5 1,018,146 - SM_b21352 0.62 +0.5 1,018,146 - SM_b21352 0.62 +0.1 1,018,172 + SM_b21352 0.68 -1.3 1,018,173 - SM_b21352 0.68 +0.5 1,018,173 - SM_b21352 0.68 -0.9 1,018,448 + +0.2 1,018,503 - +0.1 1,018,551 + -0.0 1,018,754 + SM_b21353 0.27 +0.9 1,018,754 + SM_b21353 0.27 -0.8 1,018,755 - SM_b21353 0.27 -0.5 1,018,789 - SM_b21353 0.31 +0.6 1,018,789 - SM_b21353 0.31 +1.1 1,018,789 - SM_b21353 0.31 +1.2 1,018,799 + SM_b21353 0.32 -0.5 1,018,799 + SM_b21353 0.32 -0.2 1,018,825 - SM_b21353 0.35 +0.1 1,018,825 - SM_b21353 0.35 +1.3 1,018,878 + SM_b21353 0.40 +0.4 1,018,879 - SM_b21353 0.40 -0.2 1,018,879 - SM_b21353 0.40 +1.1 1,018,991 - SM_b21353 0.52 +0.3 1,019,013 + SM_b21353 0.54 +0.1 1,019,014 - SM_b21353 0.54 -0.1 1,019,014 - SM_b21353 0.54 -0.5 1,019,038 - SM_b21353 0.56 +0.1 1,019,038 - SM_b21353 0.56 -0.1 1,019,038 - SM_b21353 0.56 +0.1 1,019,038 - SM_b21353 0.56 -0.3 1,019,038 - SM_b21353 0.56 +0.5 1,019,274 + SM_b21353 0.80 +0.2 1,019,527 - +1.5 1,019,527 - +1.3 1,019,527 - -0.1 1,019,550 + -0.3 1,019,782 - SM_b21354 0.20 +0.8 1,019,814 + SM_b21354 0.23 -0.5 1,019,814 + SM_b21354 0.23 -0.9 1,019,815 - SM_b21354 0.23 -1.4 1,019,815 - SM_b21354 0.23 +0.0 1,019,815 - SM_b21354 0.23 -0.2 1,019,901 + SM_b21354 0.29 -0.7 1,019,902 - SM_b21354 0.29 -0.2 1,019,902 - SM_b21354 0.29 +0.4 1,019,921 - SM_b21354 0.30 +0.7 1,019,999 + SM_b21354 0.36 -0.3 1,020,324 + SM_b21354 0.59 -0.3
Or see this region's nucleotide sequence