Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21336 and SM_b21337 are separated by 126 nucleotides SM_b21337 and SM_b21338 are separated by 3 nucleotides SM_b21338 and SM_b21339 are separated by 1 nucleotides SM_b21339 and SM_b21340 overlap by 28 nucleotides
SM_b21336: SM_b21336 - AraC family transcriptional regulator, at 1,002,815 to 1,003,759
_b21336
SM_b21337: SM_b21337 - iron-sulfur-binding protein, at 1,003,886 to 1,004,548
_b21337
SM_b21338: SM_b21338 - molybdopterin-binding protein, at 1,004,552 to 1,005,457
_b21338
SM_b21339: SM_b21339 - N-terminal part of the catalytic subunit of an oxidoreductase like aldehyde oxidase or xanthine dehydrogenase, at 1,005,459 to 1,005,791
_b21339
SM_b21340: SM_b21340 - hypothetical protein, at 1,005,764 to 1,006,831
_b21340
Position (kb)
1004
1005
1006 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1003.574 kb on + strand, within SM_b21336 at 1003.581 kb on - strand, within SM_b21336 at 1003.637 kb on - strand, within SM_b21336 at 1004.340 kb on - strand at 1004.340 kb on - strand, within SM_b21337 at 1004.483 kb on - strand at 1004.502 kb on - strand at 1004.567 kb on + strand at 1004.777 kb on - strand at 1004.777 kb on - strand, within SM_b21338 at 1004.860 kb on - strand, within SM_b21338 at 1004.860 kb on - strand, within SM_b21338 at 1004.872 kb on + strand, within SM_b21338 at 1004.919 kb on - strand, within SM_b21338 at 1005.131 kb on + strand, within SM_b21338 at 1005.200 kb on - strand, within SM_b21338 at 1005.261 kb on - strand, within SM_b21338 at 1005.585 kb on - strand, within SM_b21339 at 1005.607 kb on + strand, within SM_b21339 at 1005.659 kb on + strand, within SM_b21339 at 1005.660 kb on - strand, within SM_b21339 at 1005.663 kb on + strand, within SM_b21339 at 1005.663 kb on + strand, within SM_b21339 at 1005.663 kb on + strand, within SM_b21339 at 1005.664 kb on - strand, within SM_b21339 at 1005.664 kb on - strand, within SM_b21339 at 1005.664 kb on - strand, within SM_b21339 at 1005.664 kb on - strand, within SM_b21339 at 1005.669 kb on + strand, within SM_b21339 at 1005.669 kb on + strand, within SM_b21339 at 1005.670 kb on - strand, within SM_b21339 at 1005.782 kb on - strand at 1005.782 kb on - strand at 1005.782 kb on - strand at 1006.002 kb on - strand, within SM_b21340 at 1006.002 kb on - strand, within SM_b21340 at 1006.002 kb on - strand, within SM_b21340 at 1006.002 kb on - strand, within SM_b21340 at 1006.002 kb on - strand, within SM_b21340 at 1006.291 kb on + strand, within SM_b21340 at 1006.362 kb on - strand, within SM_b21340 at 1006.362 kb on - strand, within SM_b21340
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,003,574 + SM_b21336 0.80 -0.7 1,003,581 - SM_b21336 0.81 +0.7 1,003,637 - SM_b21336 0.87 +0.2 1,004,340 - +0.7 1,004,340 - SM_b21337 0.68 +0.4 1,004,483 - -0.4 1,004,502 - +0.1 1,004,567 + -0.4 1,004,777 - +2.8 1,004,777 - SM_b21338 0.25 +2.2 1,004,860 - SM_b21338 0.34 +2.4 1,004,860 - SM_b21338 0.34 -0.9 1,004,872 + SM_b21338 0.35 +0.7 1,004,919 - SM_b21338 0.41 -1.6 1,005,131 + SM_b21338 0.64 +0.2 1,005,200 - SM_b21338 0.72 +0.6 1,005,261 - SM_b21338 0.78 +0.1 1,005,585 - SM_b21339 0.38 +0.1 1,005,607 + SM_b21339 0.44 -0.2 1,005,659 + SM_b21339 0.60 +0.1 1,005,660 - SM_b21339 0.60 +0.1 1,005,663 + SM_b21339 0.61 -1.4 1,005,663 + SM_b21339 0.61 +0.9 1,005,663 + SM_b21339 0.61 -0.9 1,005,664 - SM_b21339 0.62 -0.8 1,005,664 - SM_b21339 0.62 +0.2 1,005,664 - SM_b21339 0.62 -0.3 1,005,664 - SM_b21339 0.62 +0.4 1,005,669 + SM_b21339 0.63 -0.1 1,005,669 + SM_b21339 0.63 -0.4 1,005,670 - SM_b21339 0.63 -0.9 1,005,782 - +0.6 1,005,782 - +2.3 1,005,782 - +0.2 1,006,002 - SM_b21340 0.22 +2.9 1,006,002 - SM_b21340 0.22 -0.2 1,006,002 - SM_b21340 0.22 -0.8 1,006,002 - SM_b21340 0.22 -0.1 1,006,002 - SM_b21340 0.22 -0.2 1,006,291 + SM_b21340 0.49 +0.1 1,006,362 - SM_b21340 0.56 +0.3 1,006,362 - SM_b21340 0.56 +0.6
Or see this region's nucleotide sequence