Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21316 and SM_b21317 are separated by 196 nucleotides SM_b21317 and SM_b21318 are separated by 137 nucleotides
SM_b21316: SM_b21316 - ABC transporter ATP-binding protein/permease, at 981,935 to 983,704
_b21316
SM_b21317: SM_b21317 - transcriptional activator of exopolysaccharide II synthesis, MarR family protein, at 983,901 to 984,485
_b21317
SM_b21318: SM_b21318 - glycosyltransferase, forming alpha-glycosyl linkages protein, at 984,623 to 985,876
_b21318
Position (kb) 983
984
985 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 983.074 kb on + strand, within SM_b21316 at 983.074 kb on + strand, within SM_b21316 at 983.075 kb on - strand, within SM_b21316 at 983.077 kb on + strand, within SM_b21316 at 983.077 kb on + strand, within SM_b21316 at 983.145 kb on - strand, within SM_b21316 at 983.413 kb on - strand, within SM_b21316 at 983.474 kb on - strand, within SM_b21316 at 983.474 kb on - strand, within SM_b21316 at 983.518 kb on + strand, within SM_b21316 at 983.518 kb on + strand, within SM_b21316 at 983.518 kb on + strand, within SM_b21316 at 983.518 kb on + strand, within SM_b21316 at 983.519 kb on - strand, within SM_b21316 at 983.519 kb on - strand, within SM_b21316 at 983.519 kb on - strand, within SM_b21316 at 983.520 kb on + strand, within SM_b21316 at 983.520 kb on + strand, within SM_b21316 at 983.520 kb on + strand, within SM_b21316 at 983.521 kb on - strand, within SM_b21316 at 983.521 kb on - strand, within SM_b21316 at 983.574 kb on + strand at 983.575 kb on - strand at 983.674 kb on + strand at 983.674 kb on + strand at 983.675 kb on - strand at 983.675 kb on - strand at 983.696 kb on - strand at 983.696 kb on - strand at 983.717 kb on + strand at 983.717 kb on + strand at 983.718 kb on - strand at 983.777 kb on - strand at 983.788 kb on - strand at 983.891 kb on + strand at 983.926 kb on + strand at 983.926 kb on + strand at 983.927 kb on - strand at 983.927 kb on - strand at 984.216 kb on + strand, within SM_b21317 at 984.216 kb on + strand, within SM_b21317 at 984.216 kb on + strand, within SM_b21317 at 984.217 kb on - strand, within SM_b21317 at 984.217 kb on - strand, within SM_b21317 at 984.237 kb on + strand, within SM_b21317 at 984.237 kb on + strand, within SM_b21317 at 984.238 kb on - strand, within SM_b21317 at 984.238 kb on - strand, within SM_b21317 at 984.238 kb on - strand, within SM_b21317 at 984.238 kb on - strand, within SM_b21317 at 984.366 kb on - strand, within SM_b21317 at 984.475 kb on - strand at 984.514 kb on - strand at 984.550 kb on + strand at 984.622 kb on + strand at 984.622 kb on + strand at 984.622 kb on + strand at 984.623 kb on - strand at 984.623 kb on - strand at 984.623 kb on - strand at 984.636 kb on + strand at 984.636 kb on + strand at 984.637 kb on - strand at 984.637 kb on - strand at 984.637 kb on - strand at 984.637 kb on - strand at 984.645 kb on + strand at 984.645 kb on + strand at 984.646 kb on - strand at 984.917 kb on - strand, within SM_b21318 at 984.918 kb on + strand, within SM_b21318 at 984.918 kb on + strand, within SM_b21318 at 984.918 kb on + strand, within SM_b21318 at 984.918 kb on + strand, within SM_b21318 at 984.919 kb on - strand, within SM_b21318 at 984.919 kb on - strand, within SM_b21318 at 984.919 kb on - strand, within SM_b21318 at 984.919 kb on - strand, within SM_b21318 at 984.919 kb on - strand, within SM_b21318 at 984.919 kb on - strand, within SM_b21318 at 984.977 kb on + strand, within SM_b21318 at 985.145 kb on + strand, within SM_b21318 at 985.146 kb on - strand, within SM_b21318 at 985.252 kb on - strand, within SM_b21318 at 985.252 kb on - strand, within SM_b21318
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 983,074 + SM_b21316 0.64 -0.1 983,074 + SM_b21316 0.64 -0.8 983,075 - SM_b21316 0.64 +1.4 983,077 + SM_b21316 0.65 -1.6 983,077 + SM_b21316 0.65 +1.1 983,145 - SM_b21316 0.68 -0.2 983,413 - SM_b21316 0.84 -0.0 983,474 - SM_b21316 0.87 -0.1 983,474 - SM_b21316 0.87 -1.1 983,518 + SM_b21316 0.89 +0.7 983,518 + SM_b21316 0.89 -0.3 983,518 + SM_b21316 0.89 -2.0 983,518 + SM_b21316 0.89 +0.8 983,519 - SM_b21316 0.89 +0.2 983,519 - SM_b21316 0.89 -0.5 983,519 - SM_b21316 0.89 -1.1 983,520 + SM_b21316 0.90 +1.2 983,520 + SM_b21316 0.90 -0.5 983,520 + SM_b21316 0.90 +2.8 983,521 - SM_b21316 0.90 +0.8 983,521 - SM_b21316 0.90 +0.7 983,574 + +1.2 983,575 - -0.9 983,674 + +1.2 983,674 + +1.2 983,675 - -1.2 983,675 - +0.0 983,696 - -0.1 983,696 - +1.1 983,717 + -0.3 983,717 + -0.7 983,718 - -0.3 983,777 - -0.7 983,788 - +0.1 983,891 + -0.8 983,926 + +0.3 983,926 + +1.8 983,927 - -0.3 983,927 - -0.6 984,216 + SM_b21317 0.54 -0.3 984,216 + SM_b21317 0.54 +0.9 984,216 + SM_b21317 0.54 -1.2 984,217 - SM_b21317 0.54 -0.7 984,217 - SM_b21317 0.54 -0.2 984,237 + SM_b21317 0.57 -1.3 984,237 + SM_b21317 0.57 -0.0 984,238 - SM_b21317 0.58 +0.2 984,238 - SM_b21317 0.58 +0.3 984,238 - SM_b21317 0.58 -0.8 984,238 - SM_b21317 0.58 +0.4 984,366 - SM_b21317 0.79 -0.3 984,475 - -0.4 984,514 - +0.2 984,550 + -1.6 984,622 + -0.3 984,622 + -0.3 984,622 + -0.3 984,623 - -0.3 984,623 - -0.3 984,623 - -0.2 984,636 + -0.2 984,636 + +0.2 984,637 - -0.8 984,637 - -0.1 984,637 - -1.0 984,637 - -0.2 984,645 + +0.1 984,645 + -1.3 984,646 - -1.2 984,917 - SM_b21318 0.23 -0.1 984,918 + SM_b21318 0.24 -0.9 984,918 + SM_b21318 0.24 -1.2 984,918 + SM_b21318 0.24 -1.5 984,918 + SM_b21318 0.24 -0.8 984,919 - SM_b21318 0.24 -0.8 984,919 - SM_b21318 0.24 +0.2 984,919 - SM_b21318 0.24 -0.5 984,919 - SM_b21318 0.24 -0.1 984,919 - SM_b21318 0.24 -0.4 984,919 - SM_b21318 0.24 +0.0 984,977 + SM_b21318 0.28 -0.3 985,145 + SM_b21318 0.42 -0.7 985,146 - SM_b21318 0.42 +1.4 985,252 - SM_b21318 0.50 -0.2 985,252 - SM_b21318 0.50 -0.1
Or see this region's nucleotide sequence