Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21309 and SM_b21310 are separated by 8 nucleotides SM_b21310 and SM_b21311 are separated by 11 nucleotides SM_b21311 and SM_b21312 overlap by 4 nucleotides SM_b21312 and SM_b21313 overlap by 4 nucleotides
SM_b21309: SM_b21309 - hypothetical protein, at 972,161 to 974,377
_b21309
SM_b21310: SM_b21310 - hypothetical protein, at 974,386 to 975,090
_b21310
SM_b21311: SM_b21311 - glycosyltransferase, at 975,102 to 976,364
_b21311
SM_b21312: SM_b21312 - methyltransferase, at 976,361 to 977,206
_b21312
SM_b21313: SM_b21313 - bifunctional glycosyltransferase, at 977,203 to 979,452
_b21313
Position (kb) 975
976
977 Strain fitness (log2 ratio) -1
0
1
2
3 at 974.145 kb on + strand, within SM_b21309 at 974.284 kb on + strand at 974.285 kb on - strand at 974.380 kb on + strand at 974.380 kb on + strand at 974.380 kb on + strand at 974.380 kb on + strand at 974.381 kb on - strand at 974.625 kb on + strand, within SM_b21310 at 974.626 kb on - strand, within SM_b21310 at 974.858 kb on + strand, within SM_b21310 at 974.859 kb on - strand, within SM_b21310 at 974.859 kb on - strand, within SM_b21310 at 974.943 kb on - strand, within SM_b21310 at 975.045 kb on + strand at 975.045 kb on + strand at 975.045 kb on + strand at 975.046 kb on - strand at 975.046 kb on - strand at 975.104 kb on - strand at 975.152 kb on - strand at 975.337 kb on - strand, within SM_b21311 at 975.647 kb on - strand, within SM_b21311 at 975.789 kb on + strand, within SM_b21311 at 975.789 kb on + strand, within SM_b21311 at 975.790 kb on - strand, within SM_b21311 at 975.958 kb on + strand, within SM_b21311 at 975.959 kb on - strand, within SM_b21311 at 975.961 kb on + strand, within SM_b21311 at 975.961 kb on + strand, within SM_b21311 at 975.962 kb on - strand, within SM_b21311 at 975.962 kb on - strand, within SM_b21311 at 976.112 kb on - strand, within SM_b21311 at 976.112 kb on - strand, within SM_b21311 at 976.273 kb on + strand at 976.274 kb on - strand at 976.334 kb on + strand at 976.335 kb on - strand at 976.404 kb on + strand at 976.404 kb on + strand at 976.405 kb on - strand at 976.536 kb on + strand, within SM_b21312 at 976.536 kb on + strand, within SM_b21312 at 976.536 kb on + strand, within SM_b21312 at 976.683 kb on + strand, within SM_b21312 at 976.684 kb on - strand, within SM_b21312 at 976.804 kb on - strand, within SM_b21312 at 976.804 kb on - strand, within SM_b21312 at 976.804 kb on - strand, within SM_b21312 at 976.911 kb on + strand, within SM_b21312 at 976.912 kb on - strand, within SM_b21312 at 977.089 kb on + strand, within SM_b21312 at 977.331 kb on - strand at 977.354 kb on + strand at 977.354 kb on + strand at 977.355 kb on - strand at 977.355 kb on - strand at 977.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 974,145 + SM_b21309 0.89 +0.4 974,284 + +0.4 974,285 - -0.6 974,380 + -0.3 974,380 + +0.1 974,380 + -0.2 974,380 + -0.0 974,381 - -0.3 974,625 + SM_b21310 0.34 +0.2 974,626 - SM_b21310 0.34 -0.5 974,858 + SM_b21310 0.67 +0.9 974,859 - SM_b21310 0.67 +0.1 974,859 - SM_b21310 0.67 +1.4 974,943 - SM_b21310 0.79 +0.2 975,045 + -0.0 975,045 + -1.4 975,045 + +0.1 975,046 - +0.3 975,046 - +1.0 975,104 - -1.6 975,152 - -0.3 975,337 - SM_b21311 0.19 +1.6 975,647 - SM_b21311 0.43 +0.1 975,789 + SM_b21311 0.54 +2.9 975,789 + SM_b21311 0.54 -0.2 975,790 - SM_b21311 0.54 +0.2 975,958 + SM_b21311 0.68 -0.5 975,959 - SM_b21311 0.68 +0.4 975,961 + SM_b21311 0.68 +1.0 975,961 + SM_b21311 0.68 -0.8 975,962 - SM_b21311 0.68 -0.1 975,962 - SM_b21311 0.68 -0.2 976,112 - SM_b21311 0.80 -0.4 976,112 - SM_b21311 0.80 -0.7 976,273 + +0.1 976,274 - +0.7 976,334 + +2.2 976,335 - -0.3 976,404 + -0.1 976,404 + -0.1 976,405 - -0.1 976,536 + SM_b21312 0.21 +0.7 976,536 + SM_b21312 0.21 -1.7 976,536 + SM_b21312 0.21 -0.0 976,683 + SM_b21312 0.38 +0.0 976,684 - SM_b21312 0.38 -0.6 976,804 - SM_b21312 0.52 -0.4 976,804 - SM_b21312 0.52 -0.6 976,804 - SM_b21312 0.52 +0.1 976,911 + SM_b21312 0.65 +0.1 976,912 - SM_b21312 0.65 +0.8 977,089 + SM_b21312 0.86 +1.2 977,331 - -1.0 977,354 + +0.0 977,354 + +0.8 977,355 - +0.2 977,355 - -0.2 977,355 - -0.2
Or see this region's nucleotide sequence