Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21215 and SM_b21307 are separated by 117 nucleotides SM_b21307 and SM_b21308 are separated by 44 nucleotides
SM_b21215: SM_b21215 - dipeptide uptake ABC transporter substrate-binding protein precursor, at 968,095 to 969,702
_b21215
SM_b21307: SM_b21307 - hypothetical protein, at 969,820 to 970,797
_b21307
SM_b21308: SM_b21308 - glycosyltransferase, forming alpha glycosyl linkages protein, at 970,842 to 972,164
_b21308
Position (kb) 969
970
971 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 969.002 kb on + strand, within SM_b21215 at 969.059 kb on + strand, within SM_b21215 at 969.117 kb on + strand, within SM_b21215 at 969.117 kb on + strand, within SM_b21215 at 969.118 kb on - strand, within SM_b21215 at 969.118 kb on - strand, within SM_b21215 at 969.118 kb on - strand, within SM_b21215 at 969.118 kb on - strand, within SM_b21215 at 969.126 kb on - strand, within SM_b21215 at 969.369 kb on - strand, within SM_b21215 at 969.386 kb on + strand, within SM_b21215 at 969.387 kb on - strand, within SM_b21215 at 969.410 kb on - strand, within SM_b21215 at 969.410 kb on - strand, within SM_b21215 at 969.447 kb on + strand, within SM_b21215 at 969.448 kb on - strand, within SM_b21215 at 969.448 kb on - strand, within SM_b21215 at 969.448 kb on - strand, within SM_b21215 at 969.450 kb on - strand, within SM_b21215 at 969.524 kb on - strand, within SM_b21215 at 969.592 kb on + strand at 969.817 kb on - strand at 969.853 kb on - strand at 970.010 kb on + strand, within SM_b21307 at 970.011 kb on - strand, within SM_b21307 at 970.011 kb on - strand, within SM_b21307 at 970.115 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.254 kb on + strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.255 kb on - strand, within SM_b21307 at 970.338 kb on - strand, within SM_b21307 at 970.338 kb on - strand, within SM_b21307 at 970.346 kb on + strand, within SM_b21307 at 970.347 kb on - strand, within SM_b21307 at 970.435 kb on + strand, within SM_b21307 at 970.435 kb on + strand, within SM_b21307 at 970.541 kb on + strand, within SM_b21307 at 970.542 kb on - strand, within SM_b21307 at 970.762 kb on + strand at 970.763 kb on - strand at 970.788 kb on - strand at 970.843 kb on + strand at 970.870 kb on + strand at 970.871 kb on - strand at 971.434 kb on + strand, within SM_b21308 at 971.478 kb on + strand, within SM_b21308 at 971.479 kb on - strand, within SM_b21308 at 971.540 kb on + strand, within SM_b21308 at 971.755 kb on + strand, within SM_b21308 at 971.755 kb on + strand, within SM_b21308
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 969,002 + SM_b21215 0.56 +0.8 969,059 + SM_b21215 0.60 +0.3 969,117 + SM_b21215 0.64 +0.4 969,117 + SM_b21215 0.64 +0.6 969,118 - SM_b21215 0.64 +0.2 969,118 - SM_b21215 0.64 -0.4 969,118 - SM_b21215 0.64 -0.7 969,118 - SM_b21215 0.64 +0.2 969,126 - SM_b21215 0.64 -1.9 969,369 - SM_b21215 0.79 +0.1 969,386 + SM_b21215 0.80 -0.1 969,387 - SM_b21215 0.80 -0.7 969,410 - SM_b21215 0.82 -3.3 969,410 - SM_b21215 0.82 +0.4 969,447 + SM_b21215 0.84 -0.6 969,448 - SM_b21215 0.84 +0.5 969,448 - SM_b21215 0.84 +0.1 969,448 - SM_b21215 0.84 +0.4 969,450 - SM_b21215 0.84 +0.5 969,524 - SM_b21215 0.89 -1.2 969,592 + +0.3 969,817 - +1.0 969,853 - +1.5 970,010 + SM_b21307 0.19 -0.3 970,011 - SM_b21307 0.20 -0.1 970,011 - SM_b21307 0.20 -1.1 970,115 + SM_b21307 0.30 -0.1 970,254 + SM_b21307 0.44 +1.7 970,254 + SM_b21307 0.44 +0.8 970,254 + SM_b21307 0.44 -1.1 970,254 + SM_b21307 0.44 +0.4 970,254 + SM_b21307 0.44 +0.9 970,254 + SM_b21307 0.44 -0.5 970,254 + SM_b21307 0.44 +0.1 970,255 - SM_b21307 0.44 +0.8 970,255 - SM_b21307 0.44 -0.1 970,255 - SM_b21307 0.44 +0.2 970,255 - SM_b21307 0.44 -0.5 970,338 - SM_b21307 0.53 -1.4 970,338 - SM_b21307 0.53 -0.4 970,346 + SM_b21307 0.54 -0.0 970,347 - SM_b21307 0.54 -0.5 970,435 + SM_b21307 0.63 +0.6 970,435 + SM_b21307 0.63 +0.2 970,541 + SM_b21307 0.74 -0.4 970,542 - SM_b21307 0.74 +0.1 970,762 + -0.9 970,763 - +0.3 970,788 - +0.2 970,843 + -2.2 970,870 + +0.2 970,871 - -0.9 971,434 + SM_b21308 0.45 -0.8 971,478 + SM_b21308 0.48 -0.5 971,479 - SM_b21308 0.48 -1.3 971,540 + SM_b21308 0.53 -0.1 971,755 + SM_b21308 0.69 -0.8 971,755 + SM_b21308 0.69 +0.3
Or see this region's nucleotide sequence