Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21302 and SM_b21303 are separated by 20 nucleotides SM_b21303 and SM_b21304 are separated by 33 nucleotides SM_b21304 and SM_b21143 are separated by 195 nucleotides
SM_b21302: SM_b21302 - hypothetical protein, at 885,019 to 885,474
_b21302
SM_b21303: SM_b21303 - hypothetical protein, at 885,495 to 885,923
_b21303
SM_b21304: SM_b21304 - NG,NG-dimethylarginine dimethylaminohydrolase (dimethylargininase) protein, at 885,957 to 886,751
_b21304
SM_b21143: SM_b21143 - mercuric reductase, at 886,947 to 888,368
_b21143
Position (kb) 885
886
887 Strain fitness (log2 ratio) -1
0
1
2 at 885.031 kb on - strand at 885.347 kb on - strand, within SM_b21302 at 885.370 kb on + strand, within SM_b21302 at 885.370 kb on + strand, within SM_b21302 at 885.425 kb on - strand, within SM_b21302 at 885.487 kb on + strand at 885.541 kb on + strand, within SM_b21303 at 885.645 kb on + strand, within SM_b21303 at 885.645 kb on + strand, within SM_b21303 at 885.645 kb on + strand, within SM_b21303 at 885.646 kb on - strand, within SM_b21303 at 885.646 kb on - strand, within SM_b21303 at 885.646 kb on - strand, within SM_b21303 at 885.728 kb on + strand, within SM_b21303 at 885.729 kb on - strand, within SM_b21303 at 885.729 kb on - strand, within SM_b21303 at 885.905 kb on - strand at 885.905 kb on - strand at 886.056 kb on + strand, within SM_b21304 at 886.057 kb on - strand, within SM_b21304 at 886.086 kb on + strand, within SM_b21304 at 886.086 kb on + strand, within SM_b21304 at 886.087 kb on - strand, within SM_b21304 at 886.690 kb on + strand at 886.691 kb on - strand at 886.691 kb on - strand at 886.949 kb on - strand at 887.047 kb on + strand at 887.047 kb on + strand at 887.047 kb on + strand at 887.047 kb on + strand at 887.047 kb on + strand at 887.047 kb on + strand at 887.048 kb on - strand at 887.048 kb on - strand at 887.048 kb on - strand at 887.281 kb on + strand, within SM_b21143 at 887.281 kb on + strand, within SM_b21143 at 887.282 kb on - strand, within SM_b21143 at 887.282 kb on - strand, within SM_b21143 at 887.282 kb on - strand, within SM_b21143 at 887.291 kb on - strand, within SM_b21143 at 887.365 kb on + strand, within SM_b21143 at 887.365 kb on + strand, within SM_b21143 at 887.366 kb on - strand, within SM_b21143 at 887.366 kb on - strand, within SM_b21143 at 887.456 kb on + strand, within SM_b21143 at 887.457 kb on - strand, within SM_b21143 at 887.458 kb on + strand, within SM_b21143 at 887.459 kb on - strand, within SM_b21143 at 887.459 kb on - strand, within SM_b21143 at 887.510 kb on + strand, within SM_b21143 at 887.592 kb on + strand, within SM_b21143 at 887.592 kb on + strand, within SM_b21143 at 887.593 kb on - strand, within SM_b21143
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 885,031 - +1.2 885,347 - SM_b21302 0.72 -0.1 885,370 + SM_b21302 0.77 -0.3 885,370 + SM_b21302 0.77 -1.3 885,425 - SM_b21302 0.89 -0.1 885,487 + +1.0 885,541 + SM_b21303 0.11 -0.0 885,645 + SM_b21303 0.35 -1.0 885,645 + SM_b21303 0.35 -0.2 885,645 + SM_b21303 0.35 -0.9 885,646 - SM_b21303 0.35 -1.0 885,646 - SM_b21303 0.35 -0.3 885,646 - SM_b21303 0.35 -0.6 885,728 + SM_b21303 0.54 -0.2 885,729 - SM_b21303 0.55 -0.3 885,729 - SM_b21303 0.55 -0.2 885,905 - -0.3 885,905 - +0.4 886,056 + SM_b21304 0.12 +0.3 886,057 - SM_b21304 0.13 -0.7 886,086 + SM_b21304 0.16 -0.4 886,086 + SM_b21304 0.16 -0.4 886,087 - SM_b21304 0.16 +0.2 886,690 + +0.0 886,691 - -0.5 886,691 - -0.1 886,949 - -0.4 887,047 + -0.5 887,047 + -0.3 887,047 + +0.7 887,047 + +0.2 887,047 + -0.4 887,047 + +1.6 887,048 - +0.3 887,048 - +0.2 887,048 - +0.3 887,281 + SM_b21143 0.23 +0.0 887,281 + SM_b21143 0.23 +0.5 887,282 - SM_b21143 0.24 -0.8 887,282 - SM_b21143 0.24 -0.4 887,282 - SM_b21143 0.24 +2.2 887,291 - SM_b21143 0.24 +0.9 887,365 + SM_b21143 0.29 -0.4 887,365 + SM_b21143 0.29 -0.4 887,366 - SM_b21143 0.29 -0.6 887,366 - SM_b21143 0.29 -0.4 887,456 + SM_b21143 0.36 +0.0 887,457 - SM_b21143 0.36 +0.9 887,458 + SM_b21143 0.36 +1.3 887,459 - SM_b21143 0.36 +0.4 887,459 - SM_b21143 0.36 -0.1 887,510 + SM_b21143 0.40 -0.1 887,592 + SM_b21143 0.45 +1.2 887,592 + SM_b21143 0.45 -0.6 887,593 - SM_b21143 0.45 -0.5
Or see this region's nucleotide sequence