Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21295 and SM_b21296 are separated by 270 nucleotides SM_b21296 and SM_b21297 are separated by 37 nucleotides SM_b21297 and SM_b21298 are separated by 8 nucleotides
SM_b21295: SM_b21295 - Hsp20 family heat-shock protein, at 871,579 to 872,163
_b21295
SM_b21296: SM_b21296 - hypothetical protein, at 872,434 to 872,739
_b21296
SM_b21297: SM_b21297 - bifunctional penicillin-binding protein, at 872,777 to 874,918
_b21297
SM_b21298: SM_b21298 - hypothetical protein, at 874,927 to 880,374
_b21298
Position (kb) 872
873
874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 871.796 kb on + strand, within SM_b21295 at 871.802 kb on + strand, within SM_b21295 at 871.802 kb on + strand, within SM_b21295 at 872.059 kb on - strand, within SM_b21295 at 872.157 kb on + strand at 872.258 kb on + strand at 872.258 kb on + strand at 872.258 kb on + strand at 872.302 kb on + strand at 872.302 kb on + strand at 872.345 kb on + strand at 872.345 kb on + strand at 872.516 kb on - strand, within SM_b21296 at 872.570 kb on - strand, within SM_b21296 at 872.610 kb on + strand, within SM_b21296 at 873.268 kb on - strand, within SM_b21297 at 873.309 kb on + strand, within SM_b21297 at 873.309 kb on + strand, within SM_b21297 at 873.310 kb on - strand, within SM_b21297 at 873.310 kb on - strand, within SM_b21297 at 873.377 kb on + strand, within SM_b21297 at 873.378 kb on - strand, within SM_b21297 at 873.378 kb on - strand, within SM_b21297 at 873.498 kb on + strand, within SM_b21297 at 873.706 kb on - strand, within SM_b21297 at 874.122 kb on - strand, within SM_b21297 at 874.378 kb on - strand, within SM_b21297 at 874.378 kb on - strand, within SM_b21297 at 874.481 kb on - strand, within SM_b21297 at 874.523 kb on + strand, within SM_b21297 at 874.523 kb on + strand, within SM_b21297 at 874.523 kb on + strand, within SM_b21297 at 874.524 kb on - strand, within SM_b21297 at 874.524 kb on - strand, within SM_b21297 at 874.524 kb on - strand, within SM_b21297 at 874.525 kb on + strand at 874.526 kb on - strand, within SM_b21297 at 874.526 kb on - strand, within SM_b21297 at 874.526 kb on - strand, within SM_b21297 at 874.526 kb on - strand, within SM_b21297 at 874.818 kb on - strand at 874.894 kb on - strand at 874.988 kb on + strand at 874.988 kb on + strand at 874.989 kb on - strand at 874.989 kb on - strand at 875.021 kb on + strand at 875.022 kb on - strand at 875.022 kb on - strand at 875.052 kb on - strand at 875.052 kb on - strand at 875.052 kb on - strand at 875.127 kb on + strand at 875.128 kb on - strand at 875.285 kb on + strand at 875.285 kb on + strand at 875.286 kb on - strand at 875.286 kb on - strand at 875.340 kb on - strand at 875.342 kb on + strand at 875.343 kb on - strand at 875.495 kb on + strand, within SM_b21298 at 875.603 kb on + strand, within SM_b21298 at 875.603 kb on + strand, within SM_b21298 at 875.607 kb on + strand, within SM_b21298 at 875.608 kb on - strand, within SM_b21298 at 875.641 kb on + strand, within SM_b21298 at 875.641 kb on + strand, within SM_b21298 at 875.642 kb on - strand, within SM_b21298 at 875.723 kb on + strand, within SM_b21298 at 875.766 kb on + strand, within SM_b21298 at 875.788 kb on - strand, within SM_b21298 at 875.904 kb on + strand, within SM_b21298 at 875.904 kb on + strand, within SM_b21298
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 871,796 + SM_b21295 0.37 +0.3 871,802 + SM_b21295 0.38 +0.0 871,802 + SM_b21295 0.38 +0.1 872,059 - SM_b21295 0.82 +1.3 872,157 + +0.6 872,258 + -0.0 872,258 + -0.2 872,258 + -1.0 872,302 + -0.4 872,302 + -0.3 872,345 + -1.4 872,345 + +0.7 872,516 - SM_b21296 0.27 -0.3 872,570 - SM_b21296 0.44 -0.5 872,610 + SM_b21296 0.58 -0.0 873,268 - SM_b21297 0.23 -2.0 873,309 + SM_b21297 0.25 -0.7 873,309 + SM_b21297 0.25 -0.4 873,310 - SM_b21297 0.25 +0.4 873,310 - SM_b21297 0.25 -0.8 873,377 + SM_b21297 0.28 -0.2 873,378 - SM_b21297 0.28 -0.3 873,378 - SM_b21297 0.28 -0.5 873,498 + SM_b21297 0.34 -0.6 873,706 - SM_b21297 0.43 -0.6 874,122 - SM_b21297 0.63 +0.8 874,378 - SM_b21297 0.75 +0.4 874,378 - SM_b21297 0.75 -0.4 874,481 - SM_b21297 0.80 -2.9 874,523 + SM_b21297 0.82 -0.1 874,523 + SM_b21297 0.82 +0.3 874,523 + SM_b21297 0.82 -1.7 874,524 - SM_b21297 0.82 -0.6 874,524 - SM_b21297 0.82 -0.5 874,524 - SM_b21297 0.82 -0.4 874,525 + +1.2 874,526 - SM_b21297 0.82 -0.5 874,526 - SM_b21297 0.82 +1.3 874,526 - SM_b21297 0.82 -0.7 874,526 - SM_b21297 0.82 +0.3 874,818 - -0.3 874,894 - -0.7 874,988 + -0.5 874,988 + -0.1 874,989 - -0.2 874,989 - -2.6 875,021 + -0.1 875,022 - -0.9 875,022 - -0.4 875,052 - +1.2 875,052 - +0.3 875,052 - +0.4 875,127 + -0.4 875,128 - -0.3 875,285 + -0.4 875,285 + +0.4 875,286 - -0.6 875,286 - -2.0 875,340 - -0.9 875,342 + +0.9 875,343 - -0.3 875,495 + SM_b21298 0.10 -1.0 875,603 + SM_b21298 0.12 -0.0 875,603 + SM_b21298 0.12 -0.1 875,607 + SM_b21298 0.12 +0.6 875,608 - SM_b21298 0.12 +0.9 875,641 + SM_b21298 0.13 +0.8 875,641 + SM_b21298 0.13 -0.6 875,642 - SM_b21298 0.13 -0.1 875,723 + SM_b21298 0.15 +0.3 875,766 + SM_b21298 0.15 +0.0 875,788 - SM_b21298 0.16 -1.7 875,904 + SM_b21298 0.18 -1.5 875,904 + SM_b21298 0.18 +0.4
Or see this region's nucleotide sequence