Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21278 and SM_b21279 are separated by 6 nucleotides SM_b21279 and SM_b21280 are separated by 151 nucleotides
SM_b21278: SM_b21278 - adenine deaminase, at 851,706 to 853,487
_b21278
SM_b21279: SM_b21279 - amidohydrolase, at 853,494 to 854,663
_b21279
SM_b21280: SM_b21280 - phosphoribosyltransferase, at 854,815 to 855,525
_b21280
Position (kb) 853
854
855 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 852.521 kb on + strand, within SM_b21278 at 852.557 kb on + strand, within SM_b21278 at 852.983 kb on + strand, within SM_b21278 at 852.984 kb on - strand, within SM_b21278 at 853.014 kb on - strand, within SM_b21278 at 853.014 kb on - strand, within SM_b21278 at 853.247 kb on - strand, within SM_b21278 at 853.360 kb on - strand at 853.441 kb on + strand at 853.442 kb on - strand at 853.570 kb on + strand at 853.581 kb on - strand at 853.627 kb on + strand, within SM_b21279 at 853.627 kb on + strand, within SM_b21279 at 853.628 kb on - strand, within SM_b21279 at 853.628 kb on - strand, within SM_b21279 at 853.628 kb on - strand, within SM_b21279 at 853.775 kb on + strand, within SM_b21279 at 853.775 kb on + strand, within SM_b21279 at 853.775 kb on + strand, within SM_b21279 at 853.776 kb on - strand, within SM_b21279 at 853.792 kb on + strand, within SM_b21279 at 853.810 kb on + strand, within SM_b21279 at 853.810 kb on + strand, within SM_b21279 at 853.811 kb on - strand, within SM_b21279 at 853.811 kb on - strand, within SM_b21279 at 853.811 kb on - strand, within SM_b21279 at 853.811 kb on - strand, within SM_b21279 at 853.878 kb on - strand, within SM_b21279 at 853.880 kb on - strand, within SM_b21279 at 854.189 kb on - strand, within SM_b21279 at 854.345 kb on + strand, within SM_b21279 at 854.814 kb on + strand at 854.815 kb on - strand at 854.848 kb on + strand at 855.146 kb on - strand, within SM_b21280 at 855.210 kb on + strand, within SM_b21280 at 855.211 kb on - strand, within SM_b21280 at 855.211 kb on - strand, within SM_b21280 at 855.242 kb on - strand, within SM_b21280 at 855.452 kb on + strand, within SM_b21280 at 855.453 kb on - strand, within SM_b21280 at 855.453 kb on - strand, within SM_b21280 at 855.523 kb on + strand at 855.523 kb on + strand at 855.524 kb on - strand at 855.524 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 852,521 + SM_b21278 0.46 +0.1 852,557 + SM_b21278 0.48 +0.3 852,983 + SM_b21278 0.72 +0.4 852,984 - SM_b21278 0.72 -0.2 853,014 - SM_b21278 0.73 +0.1 853,014 - SM_b21278 0.73 +0.4 853,247 - SM_b21278 0.86 +0.8 853,360 - +0.5 853,441 + +1.2 853,442 - +0.0 853,570 + +0.6 853,581 - -0.3 853,627 + SM_b21279 0.11 +4.4 853,627 + SM_b21279 0.11 -0.5 853,628 - SM_b21279 0.11 -0.3 853,628 - SM_b21279 0.11 +0.8 853,628 - SM_b21279 0.11 -0.2 853,775 + SM_b21279 0.24 +0.3 853,775 + SM_b21279 0.24 +1.4 853,775 + SM_b21279 0.24 +1.1 853,776 - SM_b21279 0.24 -0.8 853,792 + SM_b21279 0.25 -1.3 853,810 + SM_b21279 0.27 +0.1 853,810 + SM_b21279 0.27 -1.5 853,811 - SM_b21279 0.27 -0.1 853,811 - SM_b21279 0.27 +0.0 853,811 - SM_b21279 0.27 -0.0 853,811 - SM_b21279 0.27 +0.8 853,878 - SM_b21279 0.33 -1.1 853,880 - SM_b21279 0.33 +0.3 854,189 - SM_b21279 0.59 -1.0 854,345 + SM_b21279 0.73 +0.5 854,814 + +0.4 854,815 - -0.4 854,848 + +0.2 855,146 - SM_b21280 0.47 +0.7 855,210 + SM_b21280 0.56 +0.2 855,211 - SM_b21280 0.56 -0.1 855,211 - SM_b21280 0.56 -0.3 855,242 - SM_b21280 0.60 -0.3 855,452 + SM_b21280 0.90 +0.9 855,453 - SM_b21280 0.90 -0.3 855,453 - SM_b21280 0.90 -0.4 855,523 + -1.1 855,523 + -0.2 855,524 - +1.2 855,524 - +0.4
Or see this region's nucleotide sequence