Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21230 and SM_b21231 are separated by 68 nucleotides SM_b21231 and SM_b21232 are separated by 256 nucleotides
SM_b21230: SM_b21230 - glycosyltransferase, at 794,503 to 795,585
_b21230
SM_b21231: SM_b21231 - glycosyltransferase, at 795,654 to 796,808
_b21231
SM_b21232: SM_b21232 - nucleotide sugar epimerase dehydratase, at 797,065 to 799,167
_b21232
Position (kb) 795
796
797 Strain fitness (log2 ratio) -2
-1
0
1 at 794.666 kb on - strand, within SM_b21230 at 794.810 kb on + strand, within SM_b21230 at 794.810 kb on + strand, within SM_b21230 at 794.811 kb on - strand, within SM_b21230 at 795.016 kb on + strand, within SM_b21230 at 795.111 kb on - strand, within SM_b21230 at 795.116 kb on + strand, within SM_b21230 at 795.117 kb on - strand, within SM_b21230 at 795.152 kb on + strand, within SM_b21230 at 795.153 kb on - strand, within SM_b21230 at 795.157 kb on + strand, within SM_b21230 at 795.158 kb on - strand, within SM_b21230 at 795.179 kb on - strand, within SM_b21230 at 795.220 kb on - strand, within SM_b21230 at 795.220 kb on - strand, within SM_b21230 at 795.320 kb on + strand, within SM_b21230 at 795.320 kb on + strand, within SM_b21230 at 795.320 kb on + strand, within SM_b21230 at 795.321 kb on - strand, within SM_b21230 at 795.416 kb on - strand, within SM_b21230 at 795.425 kb on + strand, within SM_b21230 at 795.426 kb on - strand, within SM_b21230 at 795.487 kb on + strand at 795.488 kb on - strand at 795.580 kb on + strand at 795.580 kb on + strand at 795.580 kb on + strand at 795.580 kb on + strand at 795.581 kb on - strand at 795.581 kb on - strand at 795.581 kb on - strand at 795.581 kb on - strand at 795.596 kb on + strand at 795.596 kb on + strand at 795.597 kb on - strand at 795.597 kb on - strand at 795.820 kb on - strand, within SM_b21231 at 795.940 kb on + strand, within SM_b21231 at 795.940 kb on + strand, within SM_b21231 at 796.141 kb on + strand, within SM_b21231 at 796.142 kb on - strand, within SM_b21231 at 796.321 kb on + strand, within SM_b21231 at 796.322 kb on - strand, within SM_b21231 at 796.361 kb on - strand, within SM_b21231 at 796.379 kb on - strand, within SM_b21231 at 796.379 kb on - strand, within SM_b21231 at 796.426 kb on - strand, within SM_b21231 at 796.426 kb on - strand, within SM_b21231 at 796.428 kb on - strand, within SM_b21231 at 796.428 kb on - strand, within SM_b21231 at 796.495 kb on + strand, within SM_b21231 at 796.495 kb on + strand, within SM_b21231 at 796.495 kb on + strand, within SM_b21231 at 796.495 kb on + strand, within SM_b21231 at 796.496 kb on - strand, within SM_b21231 at 796.496 kb on - strand, within SM_b21231 at 796.496 kb on - strand, within SM_b21231 at 796.496 kb on - strand, within SM_b21231 at 796.514 kb on + strand, within SM_b21231 at 796.514 kb on + strand, within SM_b21231 at 796.516 kb on + strand, within SM_b21231 at 796.517 kb on - strand, within SM_b21231 at 796.517 kb on - strand, within SM_b21231 at 796.517 kb on - strand, within SM_b21231 at 796.689 kb on + strand, within SM_b21231 at 796.920 kb on + strand at 796.920 kb on + strand at 796.920 kb on + strand at 796.921 kb on - strand at 796.956 kb on - strand at 797.055 kb on + strand at 797.055 kb on + strand at 797.546 kb on + strand, within SM_b21232 at 797.607 kb on + strand, within SM_b21232 at 797.608 kb on - strand, within SM_b21232 at 797.765 kb on + strand, within SM_b21232 at 797.765 kb on + strand, within SM_b21232 at 797.766 kb on - strand, within SM_b21232 at 797.766 kb on - strand, within SM_b21232
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 794,666 - SM_b21230 0.15 -0.4 794,810 + SM_b21230 0.28 -0.1 794,810 + SM_b21230 0.28 -0.1 794,811 - SM_b21230 0.28 -0.2 795,016 + SM_b21230 0.47 +0.3 795,111 - SM_b21230 0.56 +0.2 795,116 + SM_b21230 0.57 -0.7 795,117 - SM_b21230 0.57 +0.8 795,152 + SM_b21230 0.60 +0.3 795,153 - SM_b21230 0.60 +0.2 795,157 + SM_b21230 0.60 +0.0 795,158 - SM_b21230 0.60 +0.4 795,179 - SM_b21230 0.62 +0.1 795,220 - SM_b21230 0.66 +0.0 795,220 - SM_b21230 0.66 -0.1 795,320 + SM_b21230 0.75 +0.6 795,320 + SM_b21230 0.75 +0.2 795,320 + SM_b21230 0.75 -0.4 795,321 - SM_b21230 0.76 +0.2 795,416 - SM_b21230 0.84 -0.3 795,425 + SM_b21230 0.85 -0.5 795,426 - SM_b21230 0.85 -0.7 795,487 + +0.1 795,488 - -1.7 795,580 + +0.1 795,580 + -0.9 795,580 + +0.0 795,580 + +0.3 795,581 - -0.9 795,581 - +0.2 795,581 - -1.6 795,581 - -0.0 795,596 + -0.3 795,596 + +0.2 795,597 - +0.8 795,597 - -0.3 795,820 - SM_b21231 0.14 +0.4 795,940 + SM_b21231 0.25 -0.9 795,940 + SM_b21231 0.25 -0.2 796,141 + SM_b21231 0.42 -0.0 796,142 - SM_b21231 0.42 +0.0 796,321 + SM_b21231 0.58 +0.3 796,322 - SM_b21231 0.58 -0.8 796,361 - SM_b21231 0.61 -0.6 796,379 - SM_b21231 0.63 -0.0 796,379 - SM_b21231 0.63 -0.1 796,426 - SM_b21231 0.67 +0.6 796,426 - SM_b21231 0.67 -0.3 796,428 - SM_b21231 0.67 -2.0 796,428 - SM_b21231 0.67 -1.2 796,495 + SM_b21231 0.73 +0.3 796,495 + SM_b21231 0.73 -0.3 796,495 + SM_b21231 0.73 -0.5 796,495 + SM_b21231 0.73 -0.3 796,496 - SM_b21231 0.73 -0.5 796,496 - SM_b21231 0.73 +0.9 796,496 - SM_b21231 0.73 -1.1 796,496 - SM_b21231 0.73 -0.8 796,514 + SM_b21231 0.74 +0.7 796,514 + SM_b21231 0.74 -0.1 796,516 + SM_b21231 0.75 -0.5 796,517 - SM_b21231 0.75 -0.6 796,517 - SM_b21231 0.75 -2.0 796,517 - SM_b21231 0.75 +0.2 796,689 + SM_b21231 0.90 -0.8 796,920 + -0.1 796,920 + -0.3 796,920 + -2.3 796,921 - -0.4 796,956 - +0.2 797,055 + -0.9 797,055 + +1.1 797,546 + SM_b21232 0.23 +0.0 797,607 + SM_b21232 0.26 -0.4 797,608 - SM_b21232 0.26 -0.2 797,765 + SM_b21232 0.33 -0.3 797,765 + SM_b21232 0.33 +0.3 797,766 - SM_b21232 0.33 +0.4 797,766 - SM_b21232 0.33 -0.1
Or see this region's nucleotide sequence