Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21200 and SM_b21201 overlap by 4 nucleotides SM_b21201 and SM_b21202 are separated by 272 nucleotides
SM_b21200: SM_b21200 - two-component response regulator protein, at 950,520 to 951,863
_b21200
SM_b21201: SM_b21201 - two-component sensor histidine kinase, at 951,860 to 953,680
_b21201
SM_b21202: SM_b21202 - hypothetical protein, at 953,953 to 954,885
_b21202
Position (kb) 951
952
953
954 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 950.954 kb on - strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 950.985 kb on + strand, within SM_b21200 at 951.040 kb on - strand, within SM_b21200 at 951.359 kb on + strand, within SM_b21200 at 951.360 kb on - strand, within SM_b21200 at 951.568 kb on + strand, within SM_b21200 at 951.568 kb on + strand, within SM_b21200 at 951.729 kb on - strand at 951.729 kb on - strand at 951.770 kb on + strand at 951.770 kb on + strand at 951.771 kb on - strand at 951.771 kb on - strand at 951.978 kb on + strand at 952.001 kb on + strand at 952.001 kb on + strand at 952.002 kb on - strand at 952.029 kb on + strand at 952.246 kb on - strand, within SM_b21201 at 952.480 kb on - strand, within SM_b21201 at 952.750 kb on + strand, within SM_b21201 at 952.750 kb on + strand, within SM_b21201 at 952.751 kb on - strand, within SM_b21201 at 952.751 kb on - strand at 952.874 kb on - strand, within SM_b21201 at 952.874 kb on - strand, within SM_b21201 at 952.875 kb on + strand, within SM_b21201 at 952.875 kb on + strand, within SM_b21201 at 952.875 kb on + strand, within SM_b21201 at 952.893 kb on + strand, within SM_b21201 at 952.923 kb on - strand, within SM_b21201 at 952.987 kb on - strand, within SM_b21201 at 953.046 kb on + strand, within SM_b21201 at 953.047 kb on - strand, within SM_b21201 at 953.110 kb on - strand, within SM_b21201 at 953.209 kb on - strand, within SM_b21201 at 953.209 kb on - strand, within SM_b21201 at 953.211 kb on + strand, within SM_b21201 at 953.244 kb on + strand, within SM_b21201 at 953.244 kb on + strand, within SM_b21201 at 953.244 kb on + strand, within SM_b21201 at 953.244 kb on + strand, within SM_b21201 at 953.245 kb on - strand, within SM_b21201 at 953.245 kb on - strand, within SM_b21201 at 953.245 kb on - strand, within SM_b21201 at 953.331 kb on + strand, within SM_b21201 at 953.331 kb on + strand, within SM_b21201 at 953.332 kb on - strand, within SM_b21201 at 953.332 kb on - strand, within SM_b21201 at 953.332 kb on - strand, within SM_b21201 at 953.373 kb on + strand, within SM_b21201 at 953.373 kb on + strand, within SM_b21201 at 953.374 kb on - strand, within SM_b21201 at 953.374 kb on - strand, within SM_b21201 at 953.374 kb on - strand, within SM_b21201 at 953.374 kb on - strand, within SM_b21201 at 953.374 kb on - strand, within SM_b21201 at 953.374 kb on - strand, within SM_b21201 at 953.374 kb on - strand, within SM_b21201 at 953.587 kb on + strand at 953.587 kb on + strand at 953.587 kb on + strand at 953.587 kb on + strand at 953.587 kb on + strand at 953.588 kb on - strand at 953.588 kb on - strand at 953.590 kb on - strand at 953.590 kb on - strand at 953.590 kb on - strand at 953.674 kb on - strand at 953.750 kb on + strand at 953.751 kb on + strand at 953.752 kb on - strand at 953.984 kb on + strand at 953.985 kb on - strand at 954.088 kb on + strand, within SM_b21202 at 954.089 kb on - strand, within SM_b21202 at 954.089 kb on - strand, within SM_b21202 at 954.089 kb on - strand, within SM_b21202 at 954.089 kb on - strand, within SM_b21202 at 954.097 kb on + strand, within SM_b21202 at 954.097 kb on + strand, within SM_b21202 at 954.097 kb on + strand, within SM_b21202 at 954.098 kb on - strand, within SM_b21202 at 954.098 kb on - strand, within SM_b21202 at 954.098 kb on - strand, within SM_b21202 at 954.100 kb on + strand, within SM_b21202 at 954.100 kb on + strand, within SM_b21202 at 954.101 kb on - strand, within SM_b21202 at 954.101 kb on - strand, within SM_b21202 at 954.139 kb on + strand, within SM_b21202 at 954.428 kb on + strand, within SM_b21202 at 954.428 kb on + strand, within SM_b21202 at 954.434 kb on + strand, within SM_b21202 at 954.435 kb on - strand, within SM_b21202 at 954.435 kb on - strand, within SM_b21202 at 954.478 kb on + strand, within SM_b21202
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 950,954 - SM_b21200 0.32 -0.2 950,985 + SM_b21200 0.35 -0.1 950,985 + SM_b21200 0.35 -0.5 950,985 + SM_b21200 0.35 +0.2 951,040 - SM_b21200 0.39 -0.1 951,359 + SM_b21200 0.62 +0.3 951,360 - SM_b21200 0.62 -0.3 951,568 + SM_b21200 0.78 +0.4 951,568 + SM_b21200 0.78 -1.0 951,729 - -0.3 951,729 - -0.8 951,770 + +0.3 951,770 + -0.4 951,771 - -0.1 951,771 - -1.6 951,978 + -0.3 952,001 + +0.3 952,001 + -0.9 952,002 - -0.2 952,029 + -0.4 952,246 - SM_b21201 0.21 +0.0 952,480 - SM_b21201 0.34 -2.6 952,750 + SM_b21201 0.49 +0.9 952,750 + SM_b21201 0.49 +0.0 952,751 - SM_b21201 0.49 +0.5 952,751 - -0.4 952,874 - SM_b21201 0.56 -0.4 952,874 - SM_b21201 0.56 -2.8 952,875 + SM_b21201 0.56 +1.7 952,875 + SM_b21201 0.56 +0.4 952,875 + SM_b21201 0.56 +0.1 952,893 + SM_b21201 0.57 -0.2 952,923 - SM_b21201 0.58 +0.7 952,987 - SM_b21201 0.62 +0.6 953,046 + SM_b21201 0.65 -0.0 953,047 - SM_b21201 0.65 +0.4 953,110 - SM_b21201 0.69 -1.0 953,209 - SM_b21201 0.74 +0.3 953,209 - SM_b21201 0.74 -0.1 953,211 + SM_b21201 0.74 +0.2 953,244 + SM_b21201 0.76 -0.3 953,244 + SM_b21201 0.76 -0.4 953,244 + SM_b21201 0.76 -0.1 953,244 + SM_b21201 0.76 -1.8 953,245 - SM_b21201 0.76 -0.4 953,245 - SM_b21201 0.76 +3.8 953,245 - SM_b21201 0.76 +0.5 953,331 + SM_b21201 0.81 +0.3 953,331 + SM_b21201 0.81 -0.3 953,332 - SM_b21201 0.81 -0.2 953,332 - SM_b21201 0.81 +0.8 953,332 - SM_b21201 0.81 -0.2 953,373 + SM_b21201 0.83 +0.8 953,373 + SM_b21201 0.83 -1.5 953,374 - SM_b21201 0.83 +0.2 953,374 - SM_b21201 0.83 +8.9 953,374 - SM_b21201 0.83 -0.1 953,374 - SM_b21201 0.83 +0.6 953,374 - SM_b21201 0.83 -0.1 953,374 - SM_b21201 0.83 +0.2 953,374 - SM_b21201 0.83 -1.0 953,587 + -1.4 953,587 + -1.8 953,587 + -0.1 953,587 + -0.1 953,587 + +0.8 953,588 - +0.6 953,588 - -0.0 953,590 - -1.2 953,590 - +0.7 953,590 - -0.2 953,674 - -0.2 953,750 + -0.4 953,751 + -0.7 953,752 - +0.2 953,984 + +0.6 953,985 - -0.5 954,088 + SM_b21202 0.14 -0.2 954,089 - SM_b21202 0.15 +2.2 954,089 - SM_b21202 0.15 -1.2 954,089 - SM_b21202 0.15 +0.7 954,089 - SM_b21202 0.15 -1.2 954,097 + SM_b21202 0.15 -0.5 954,097 + SM_b21202 0.15 +0.2 954,097 + SM_b21202 0.15 -1.2 954,098 - SM_b21202 0.16 -0.1 954,098 - SM_b21202 0.16 +0.2 954,098 - SM_b21202 0.16 +0.2 954,100 + SM_b21202 0.16 -0.9 954,100 + SM_b21202 0.16 -0.2 954,101 - SM_b21202 0.16 -1.9 954,101 - SM_b21202 0.16 -0.0 954,139 + SM_b21202 0.20 -0.9 954,428 + SM_b21202 0.51 +0.6 954,428 + SM_b21202 0.51 +0.6 954,434 + SM_b21202 0.52 -0.1 954,435 - SM_b21202 0.52 -0.0 954,435 - SM_b21202 0.52 -0.3 954,478 + SM_b21202 0.56 +0.2
Or see this region's nucleotide sequence